| Annotation |
|---|
| Description | jgi|Araly1|941029|scaffold_601573.1 |
| Sequence |
GTTTTTAATT CTCCGAGCTA ATGGCGACGG CTACGACGAC TGCTACGGCT GCGTTTAGTG GTGTAGTCAG CGTAGGAACG AAGACTCGAA GGATTTCTAC GTTTTCTCAT CTTCAACCTT CTGTGGCTTT TCCGGCGAAG CCCAATTCCT TCAAACTTCT GAAATTTAAG CAGAGCGCGA GGCTCACACG GCGGCTTGAG CATCGGCCAT TCATTGTCCG ATGTGAAGCT TCTTCCTCTA ATGGAAGGCT TACACAGCAA GAATTCACAG AAATGGCGTG GCAATCGATA GTTTCTTCAC CAGATGTTGC GAAGGAGAAT AAGCAACAGA TTGTGGAGAC AGAGCATCTA ATGAAAGCTC TTTTGGAGCA GAAGAATGGT TTAGCTCGCA GGATTTTCTC TAAGATCGGT GTGGATAACA CTAAGGTTCT AGAAGCAACT GAGAAGTTCA TTCAACGCCA GCCAAAGGTG TATGGAGATG CTGCTGGGTC GATGTTGGGG CGTGATTTGG AAGCTCTGTT CCAGAGAGCA AGACAGTTTA AGAAAGATTT AGGAGACTCT TATGTGTCAG TGGAGCATTT GGTTCTTGCT TTTGCTGATG ATAAGCGGTT TGGGAAACAG TTGTTTAAGG ATTTTCAGAT ATCAGAGAAG ACCTTGAAAT CCGCAATTGA ATCCATTAGA GGGAAACAAT CAGTCATTGA CCAAGATCCG GAAGGCAAGT ATGAGGCATT GGAGAAGTAT GGAAAAGATT TGACAGCAAT GGCAAGAGAA GGAAAACTCG ATCCTGTGAT TGGTAGAGAT GACGAAATCC GTAGATGCAT TCAGATTCTC TCAAGGAGAA CGAAGAACAA CCCCGTGTTG ATTGGTGAAC CAGGTGTTGG TAAAACCGCA ATTTCAGAAG GACTTGCTCA GAGGATTGTG CAAGGAGATG TACCTCAAGC ATTGATGAAC AGAAAGTTGA TATCTCTTGA TATGGGTGCT CTCATTGCTG GAGCAAAGTA TCGGGGAGAA TTCGAAGATA GACTAAAGGC TGTACTTAAG GAAGTCACAG ACTCAGAAGG CCAAATCATT TTGTTCATCG ATGAGATCCA CACAGTTGTT GGTGCAGGTG CGACTAATGG GGCCATGGAT GCTGGTAATC TGCTGAAACC GATGCTGGGT CGAGGCGAGT TACGTTGTAT CGGTGCAACA ACGCTTGATG AATACAGGAA ATACATAGAG AAAGATCCAG CCTTGGAACG TAGGTTTCAA CAGGTTTATG TCGATCAACC TACGGTTGAA GACACGATTT CGATTCTCCG TGGTTTGCGG GAAAGGTATG AACTTCATCA TGGAGTTCGC ATCTCAGATA GTGCTCTAGT GGAAGCTGCT ATCCTCTCGG ACCGTTACAT CAGCGGCAGG TTTCTACCCG ATAAAGCAAT TGACTTGGTC GATGAAGCGG CAGCCAAATT GAAAATGGAA ATCACTTCGA AACCGACAGC TCTTGACGAG CTTGACCGTT CGGTGATAAA GCTTGAAATG GAGAGGCTTT CACTCACCAA TGATACAGAC AAAGCTTCTA GAGAGAGATT GAATCGAATT GAAGCAGAGT TAGTGTTATT AAAGGAGAAG CAAGCTGAAT TAACCGAACA GTGGGAGCAC GAGAGGTCTG TTATGTCCCG TCTTCAGTCG ATTAAAGAGG AGATTGATCG AGTAAACGTC GAGATCCAGC AGGCGGAACG TGAATACGAT CTTAACCGTG CAGCTGAGCT CAAATACGGA AGCTTAAACT CATTGCAGCG ACAGCTTAAT GAAGCAGAGA CAGAGCTGAA CGAGTACTTA AGCTCCGGGA AATCTATGTT CAGAGAAGAG GTTTTGGGTA GCGATATCGC CGAGATTGTG AGTAAATGGA CTGGTATCCC GGTATCGAAG CTTCAACAGT CTGAAAGAGA TAAACTTCTA CATTTGGAAG AAGAATTGCA TAAAAGGGTA GTCGGTCAAA ACCCAGCAGT GACTGCGGTA GCTGAAGCAA TTCAACGATC AAGGGCTGGT CTTTCGGATC CAGGCCGTCC AATAGCTAGT TTCATGTTTA TGGGACCAAC TGGTGTGGGT AAAACAGAGC TAGCCAAAGC ACTTGCTTCT TATATGTTCA ACACAGAAGA AGCTTTAGTC AGAATTGACA TGAGTGAGTA CATGGAGAAG CATGCTGTCT CTAGGCTCAT TGGAGCTCCA CCTGGATATG TTGGTTACGA AGAAGGAGGA CAGTTAACAG AAACGGTTAG AAGAAGGCCT TATTCGGTCA TCCTCTTTGA TGAGATTGAG AAAGCTCATG GAGATGTCTT CAATGTGTTT CTCCAAATCT TGGACGATGG GCGAGTCACA GATTCTCAAG GACGTACTGT GAGTTTCACC AATACCGTCA TTATTATGAC TTCAAATGTT GGTTCGCAGT TTATTCTGAA CAACACAGAT GATGATGCTA ATGAGCTCGC TTATGAAACG ATTAAAGAGA GAGTGATGAA TGCTGCAAGA TCAATCTTTC GTCCTGAATT CATGAATAGG GTTGATGAGT ATATAGTTTT CCAACCTCTT GACCGCGAGC AGATCAACCG CATTGTTCGG TTACAGCTGG CACGTGTGCA GAAGCGAATT GCAGACAGGA AAATGAAGAT AAACATCACA GATGCAGCAG TCGAACTTCT CGGAAGCCTA GGGTATGATC CAAACTATGG AGCTAGACCT GTTAAGCGCG TAATACAGCA AAACATTGAG AATGAGCTCG CTAAAGGTAT CTTGAGAGGA GATTTCAAGG AGGAGGATGG CATTTTGATC GATACCGAGG TCACAGCGTT CTCCAATGGC CAGTTACCTC AGCAAAAGCT CACATTCAAG AAGATTGAGT CAGAAACGGC AGATGCTGAA CAAGAAGAAG AAGAAGCTTT CTCAAAACAG AGCAGTTGAA AAATGAAACC TTTTGGAGC |
| Length | 2959 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6034859.. 6038748 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G15450.1 |
| Description | casein lytic proteinase B3 |
| TAIR curator summary | Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. |
| Alias | [APG6][AtCLPB3][CLPB-P][CLPB3][ALBINO AND PALE GREEN 6][CASEIN LYTIC PROTEINASE B-P][casein lytic proteinase B3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.44949 |
Ahg485715 | plasma membrane intrinsic protein 2A |
| 7.34847 |
Ahg943979 | myo-inositol-1-phosphate synthase 1 |
| 8.24621 |
Ahg928978 | heat shock protein 70 |
| 10.6771 |
Ahg497022 | Transmembrane amino acid transporter family protein |
| 11.225 |
Ahg490234 | Outer arm dynein light chain 1 protein |
| 11.4018 |
Ahg938670 | Calcium-dependent phosphotriesterase superfamily protein |
| 11.7473 |
Ahg493744 | HSP20-like chaperones superfamily protein |
| 12.49 |
Ahg471804 | heat shock protein 70B |
| 14.8324 |
Ahg480886 | DNAJ heat shock family protein |
| 15.4919 |
Ahg932186 | myo-inositol-1-phosphate synthase 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|