| Annotation |
|---|
| Description | jgi|Araly1|945018|scaffold_701247.1 |
| Sequence |
GTAAAAAACC TAAAAAGAGG ATGAAACTCG CAGGTCTGAA ATCGATCGAG AACGCTCACG AAGATTCCGT TTGGGCGGCG ACGTGGGTTC CAGCGACGGA AGATCGACCG GCGTTGCTTC TGACTGGATC TCTAGACGAG ACGGTGAAGT TATGGCGACC GGACGAGCTG GATCTTGTGC GGACTAATAC TGGACACTCA TTGGGAGTAG CAGCTTTGGC GGCGCATCCT TCTGGGATCA TTGCAGCTTC TTCTTCGCTT GATAGCTTCG TCCGTGTGTT TGATGTTGAT ACTAATGCTA CAATTGCTGT TTTGGAAGCT CCTCCTTCTG AGGTTTGGGG AATGCAGTTT GAGCCTAAGG GTACAATCCT TGCTGTTGCA GGTGGAAGTA GTGCCTCAGT CAAGCTTTGG GACACTTCAA GCTGGAGATT AATCTCAACT CTATCAATCC CACGCCCAGA AGCACCAAAA CCTTCTGAGA AAACCAGCAG CAAGAAATTC GTTCTCTCAG TGGCTTGGTC TCCTAATGGG AAACGGCTTG CTTGTGGTTC AATGGATGGC ACGATCTGTG TCTTTGATGT TGACCGTTCA AAGCTTCTTC ATCAGCTAGA AGGTCACAAC ATGCCTGTAA GGTCCCTTGT GTTCTCCCCT GTAGATCCGA GAATCCTCTT CTCCGGATCA GATGATGGGC ATGTGAACAT GCACGATGCA GAAGGGAAAA CACTGTTGGG GTCCATGTCG GGGCACACGA GCTGGGTGCT TAGCGTTGAT GCTAGCCCAG ACGGTGGAGC CATAGCAACT GGCTCAAGCG ATAGAACTGT GAGGCTATGG GATCTTAAAA TGAGAGCTGC GATTCAGACA ATGAGCAACC ACAATGACCA GGTTTGGTCT GTGGCGTTTA GACCACCAGG TGGAACTGGT GTCCGGGCTG GTCGACTTGC TAGTGTCTCT GATGACAAGA GTGTATCGCT CTACGATTAC TCATGAACAA TTTGTTTTTT TCTTTTAT |
| Length | 1008 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 4782566.. 4784083 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G29830.1 |
| Description | Transducin/WD40 repeat-like superfamily protein |
| TAIR curator summary | The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin. |
| Alias | [SKI8][VIP3][A. thaliana homolog of yeast SKI8][vernalization independence 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4 |
Ahg495214 | conserved oligomeric Golgi complex component-related / COG complex component-related |
| 6.9282 |
Ahg945389 | protein phosphatase X 1 |
| 9.79796 |
Ahg480956 | methyltransferases |
| 16 |
Ahg476389 | tRNA synthetase beta subunit family protein |
| 16.9115 |
Ahg474891 | general control non-repressible 3 |
| 16.9706 |
Ahg922941 | AAA-type ATPase family protein |
| 18.4932 |
Ahg940355 | DEA(D/H)-box RNA helicase family protein |
| 19.4936 |
Ahg947127 | Haem oxygenase-like, multi-helical |
| 20.2978 |
Ahg924144 | Ribosomal protein S5/Elongation factor G/III/V family protein |
| 24.98 |
Ahg941854 | prefoldin 5 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
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