Detail


ID : Ahg949026

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|949026|scaffold_800913.1
Sequence
GAATTAGGAG GAGAAGAAGA ATGTCTCACA GGAAGTTTGA GCATCCAAGA CATGGTTCTC TTGGTTTCTT ACCAAGAAAG AGAGCTAATC GTCACAGAGG AAAGGTGAAG GCTTTTCCTA AGGATGATCA AACTAAGCCT TGCAAGTTCA CAGCTTTCAT GGGTTACAAA GCTGGTATGA CTCATATTGT CAGAGATGTC GAGAAACCCG GATCCAAGCT TCACAAGAAG GAGACATGTG AGGCTGTTAC TATCATTGAG ACACCAGCTA TGGTTGTTGT TGGAGTTGTT GCTTATGTGA AGACTCCGAG AGGTTTGAGG TCTTTGAACA CTGTTTGGGC ACAGCATTTG AGTGAGGAGG TTAGGAGAAG GTTCTACAAG AACTGGGCTA AGTCTAAGAA GAAGGCTTTT ACCGGGTACG CTAAGCAGTA TGAAAGTAAC GATGGCAGGA AGGGTATCCA GGCTCAGCTT GACAAGATGA AGAAATACGG AACTGTTATC CGTGTTCTGG CTCACACTCA GATCAGGAAG ATGAAGGGGT TGACGCAGAA GAAGGCTCAC ATGATGGAGA TCCAGATAAA TGGTGGTACC ATTATCCCGA TTGACGCTGT TTTCCAGAAG GATGAAATGA TTGATGTGAT TGGTGTGACC AAGGGTAAGG GTTACGAAGG AGTTGTAACC CGTTGGGGTG TGACAAGGCT TCCCCGTAAG ACTCACAGGG GTCTACGTAA GGTTGCTTGT ATCGGTGCGT GGCATCCAGC TAGAGTGTCC TACACTGTAG CTAGGGCTGG TCAGAACGGT TACCATCACC GTACTGAGCT AAACAAGAAG ATTTACAGGT TGGGCAAAGT TGGTACTGAG ACTCATTCAG CCATGACTGA ATATGACAGG ACTGAGAAGG AAATAACTCC AATGGGAGGA TTCGCACATT ACGGTATAGT GAAGGATGAC TACTTGATGA TTAAGGGTTG TTGCATGGGT CCAAAGAAGA GAGTTGTGAC TCTGCGCCAG TCGCTGCTTA GGCAGACTTC TCGTCTTGCG ATGGAGGTGA TTAATATCAA GTTCGTTGAT ACTTCCTCCA AGCAAGGACA TGGTCACTTC CAGACCAGCG AGGAAAAGGC CAAGTTTCTT GGTCGTAGTA TTAGATAAGT TTTTTTATAA GACTCAAG
Length1168
Protein Sequence
Protein Residue
Map Locationscaffold_8: 5970850.. 5972417
Download Sequence
A.thaliana
AGI-codeAT1G43170.1
Descriptionribosomal protein 1
TAIR curator summaryEncodes a cytoplasmic ribosomal protein.
Alias[ARP1][emb2207][RP1][RPL3A][ribosomal protein 1][embryo defective 2207]
Gene coexpression
MR
MR Locus Description
6.32456 Ahg929919 Eukaryotic aspartyl protease family protein
12.4097 Ahg482420 PIN domain-like family protein
12.53 Ahg940287 serine carboxypeptidase-like 35
16.8819 Ahg952342 transposable element gene
17.7764 Ahg944771 Ribosomal protein L39 family protein
19.5959 Ahg932915
20.567 Ahg489647 Duplicated homeodomain-like superfamily protein
21.3542 Ahg939709 adenosine kinase 2
30.6105 Ahg939278 Putative endonuclease or glycosyl hydrolase
31.496 Ahg941477
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression