Detail


ID : Ahg951489

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|951489|scaffold_803376.1
Sequence
GGTAGGAATT GGCTGTGGAG ATGTCTTCAC TCACCTCCGT CGAATTGAAT TTTCTGGTTT TCCGATATCT TCAGGAATCA GGGTTTACAC ACTCTGCATT CACTCTAGGT TATGAGGCAG GGATTAATAA ATCCAACATT GATGGGAATA TGGTTCCACC TGGTGCTCTT ATCAAATTTG TTCAGAAAGG ACTCCAGTAC ATGGAGATGG AAGCTAATTT GAGCAATAGT GAAGTGGACA TTGATGAGGA TTTCTCATTC TTTCAACCCT TGGATCTGAT TTCAAAGGAT GTTAAGGAAC TGCAGGATAT GCTGAGGGAA AAGAAGAGGA AAGAGAGGGA TAGGGAGAAG GAAAGAGACA GGTCTAAAGA AAACGATAAA GAGGTTGAAC GAGAACATGA AGGTGATCGC AACCGAGCTA AGGAAAAGGA TAGGCACGAG AAACAGAAGG AACGAGAGAG GGAAAGGGAA AAATTGGAAC GTGAAAAGGA GAGGGAAAGA GAGAAGATAG AACGAGAAAA GGAACGAGAA AGGGAGAAGA TGGAACGGGA AATATTCGAG AGGGAGAAGG AAAGATTGAA ATTAGAGAAA GAAAGAGAAA TGGAACGGGA GAGGGAAAGA GAGAAGATAG AGAGGGAAAA GGGCCATGAA AAACAGCTTG GAGATGCTGA TAGGGAAATG GTTATTGACC AAACTGACAA AGAAAATGCT GGGGATCTTG AGCATGGGCG TTCTACAGGC GCAGAACCTA TGGATATCGT GATGACTCCT ACATCTCTGA CAAGTCACAT TCCTAGTTCT GATGTGAGGA TTTTGGAAGG GCATACTTCC GAGGTTTGTG CTTGCGCATG GAGTCCCTCG GCTTCACTTC TTGCGTCAGG GTCTGGTGAT GCAACAGCGC GTATCTGGAG TATTCCGGAA GGATCATTCA AATCTGTGCA TACTGGTCGG AATATCAACG CTTTAATCCT GAAGCATGCA AAAGGCAAGT CAAACGAGAA GAGCAAGGAT GTGACCACTC TTGACTGGAA TGGTGAAGGG ACTTTACTTG CAACTGGTTC ATGTGATGGC CAAGCAAGAA TCTGGAATTT AAATGGTGAC CTGATAAGTA CTCTGAGCAA ACACAAGGGA CCTATTTTTT CCCTTAAGTG GAACAAGAAG GGTGACTATC TTTTAACTGG CAGTGTTGAT AGAACTGCTG TTGTTTGGGA CGTAAAGGCA GAGGAGTGGA AGCAGCAATT TGAATTTCAT TCAGGTCCAA CACTTGATGT TGATTGGCGC AACAATGTAT CTTTTGCAAC GAGTTCCACG GACAGCATGA TCTACTTATG TAAGATTGGA GAAACTAGGC CGGCCAAAAT CTTTGCTGGG CATCAGGGTG AGGTTAATTG CGTGAAATGG GATCCTACTG GCTCATTATT GGCCTCATGC TCAGATGACA GCACTGCTAA GATATGGAAT ATAAAGCAGA ACACCTTTGT TCATGACCTC CGAGAGCATA CTAAGGAAAT TTATACAATC AGATGGAGCC CGACAGGACC AGGAACTAAC AATCCTAACA AACAGCTAAC TCTTGCGAGT GCATCATTTG ACTCATCAGT AAAGCTATGG GATGCAGAAC TCGGAAAGAT GCTATGTAGT TTCAACGGAC ACAGGGAACC GGTATACTCA CTGGCATTTA GTCCAAACGG GGAGTACATA GCGAGTGGGT CTTTGGACAG ATCGATACAC ATATGGTCGA TAAAAGAAGG TAAAATCGTA AAGACATACA CAGGAAATGG AGGGATATTC GAAGTGTGTT GGAATAAAGA AGGTAACAAA ATCGCAGCTT GCTTTGCTGA TAACTCAGTC TGCGTTCTTG ATTTCAGAAT GTAGTTTTCT TAACTGTAGT TCTTA
Length1895
Protein Sequence
Protein Residue
Map Locationscaffold_8: 21016798.. 21020509
Download Sequence
A.thaliana
AGI-codeAT5G67320.1
DescriptionWD-40 repeat family protein
TAIR curator summaryEncodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
Alias[HOS15][high expression of osmotically responsive genes 15]
Gene coexpression
MR
MR Locus Description
2.44949 Ahg317971 ubiquitin-specific protease 13
2.82843 Ahg472236
3 Ahg488536 SART-1 family
3 Ahg471712 protein-protein interaction regulator family protein
10.247 Ahg488117 RNA helicase family protein
13.6748 Ahg322459
13.8564 Ahg331729
14.0712 Ahg493213 DEA(D/H)-box RNA helicase family protein
16.4317 Ahg925037 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
16.5529 Ahg481141
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression