Detail



ID : Ahg313077

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|313077|fgenesh1_pm.C_scaffold_1001857
Sequence
ATGGAGGTCA AAAGCGTGAA CACCACGGCG ATGATACTTG GTCTATTGTT TCTAATCAGC TTCGTCGCTG CGGAAGATCC GTATAGATTC TTCGAATGGC ACGTAACATA CGGCAACATA TCTCCTCTCA ACGTTGCACA ACAGGGTATA TTGATCAATG GGAAGTTCCC AGGACCGGAT ATCGTCTCTG TTACCAATGA TAATCTCATC ATTAACGTAT TTAACCATCT CGACGAATCT TTCCTTATAT CATGGAGCGG GATTCGAAAT TGGAGGAATT CATACCAGGA CGGAGTGTAC GGAACGACGT GCCCAATCCC GCCGGGAAAA AACTACACCT ACGTTCTTCA GGTTAAAGAT CAGATTGGAA GTTTCTACTA CTTCCCCTCT CTCGGCTTTC ACAAAGCCGC CGGTGGATTT GGAGCTATTC GTATCTCCAG CCGCCCCAAA ATCCCCGTTC CATTCCCAGC TCCCGCTGAT GATTACACCG TTCTCATCGG TGACTGGTAC AAAACCAACC ACAAGGACTT GAGAGCACAA CTCGATAATG GTGGAAAGCT TCCTTTACCA GATGGAATTC TCATCAATGG TCGCGGTAGT GGCGCCACCC TCAACATTGA ACCAGGTAAG ACTTATAGAC TGAGGATATC AAATGTTGGA TTGCAAAACT CTCTCAACTT CCAAATCCAA AACCACATGA TGAAGTTAGT TGAGGTCGAA GGGACACACA CTATTCAGAC TCCATTCTCT ACGCTTGATG TCCACGTCGG TCAATCTTAC TCGGTCCTTA TAACAGCTGA CCAGCCTGCA AAAGATTATT ATATTGTGGT CTCTAGTAGG TTTACCTCCA AGATCCTTAT CACCACCGGT GTTCTTCATT ACAGTAATTC TGCTGGACCT GTTTCTGGAC CTATTCCAGA TGGACCAACT CAGTTGCCAT GGTCTTTTGA CCAAGCACGA GCCATCAAGA CCAACCTTAC AGCGAGTGGA CCAAGGCCAA ACCCTCAAGG TTCATACCAC TATGGCAAGA TAAATATCAC TCGAACAATC AGACTTGCTA ACTCTGCTGG AAATATCAAA GGCAAGCAAC GATACGCAGT GAATAGTGCA TCATTTTACC CAGCAGACAC CCCTTTGAAA CTAGCGGACT ACTTCAAAAT TGCCGGTGTA TACAATCCTG GAAGCATACC TGATCAGTCC ACATATGGAG CAATATTCCC TGTTACATCA GTAATGCAAA CTGATTACAA AACTTTTGTG GAGATTGTTT TCGAGAACTG GGAAGATATT GTCCAGACCT GGCACCTTGA CGGTTACTCT TTCTACGTGG TTGGAATGGA ACTTGGGAAG TGGAGTGCTG CCAGTAGAAA AGTCTACAAT CTAAACGACG CAGTCTCACG GTGCACTGTT CAGGTGTATC CCAAATCATG GACTGCCATA TACGTATCAC TGGACAATGT AGGAATGTGG AACCTAAGAT CAGAGTTATG GGAAAGACAA TACCTGGGAC AACAGTTCTA CATGCGTGTT TACACAACCT CCACTTCCCT CAGAGATGAA TACTTGATCC CGAAGAACGC TCTTCTCTGC GGCAGGGCCA CTGGCCACCA CACCACGGCG CCGCTGCAGT GA 
Length1632
Protein Sequence
Protein Residue
Map Locationscaffold_1: 9011511.. 9014282
Download Sequence
A.thaliana
AGI-codeAT1G21850.1
DescriptionSKU5 similar 8
TAIR curator summary
Alias[sks8][SKU5 similar 8]
Gene coexpression
MR
MR Locus Description
16.7631 Ahg483504 Pectin lyase-like superfamily protein
18.2209 Ahg483520
36.9865 Ahg897677 cytochrome P450, family 71, subfamily A, polypeptide 23
39.3446 Ahg492081 seed storage albumin 1
49.3862 Ahg937203 Concanavalin A-like lectin protein kinase family protein
54.6992 Ahg947831 AGAMOUS-like 75
56.0714 Ahg918053
60.5227 Ahg947899
67.624 Ahg890409 NAC domain containing protein 71
68.1762 Ahg952007 Concanavalin A-like lectin protein kinase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression