Detail


ID : Ahg313839

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619
Sequence
ATGGCGGATA ATAAGGTAAA TCTGTCTATT AATGGACAAT CAAAAGTGCC TCCAGGTTTC AGATTCCATC CCACCGAAGA AGAACTTCTC CATTACTATC TCCGTAAGAA AGTTAACTCT CAGAAGATCG ATCTTGATGT CATTCGTGAA ATTGATCTCA ACAAGCTCGA GCCTTGGGAT ATTCAAGAGG AATGTAGAAT CGGTTCGACG CCACAAAACG ACTGGTACTT CTTCAGCCAC AAGGACAAGA AGTATCCAAC CGGGACCAGG ACAAACCGGG CAACAGTCGC TGGATTTTGG AAAGCTACCG GACGTGACAA GATCATCTGC AGTTGCATCC GGAGGATTGG ATTGAGGAAG ACACTCGTAT TCTACAAAGG AAGAGCTCCT CACGGTCAGA AATCCGATTG GATCATGCAT GAATATCGCC TCGACGATAC TCCAATGTCG AATGGCTATT CTGATGTTGT AACCGAAGAT CCAATGAACT ACAACGAAGA AGGTTGGGTG GTATGTCGAG TGTTCAGGAA GAAGAACTAT CAAAAGATCG ACGATTGTCC TAAAATCACT CTATCTTCTT CAATTGATGA CACGGAGGAA GAGAAGAGGC CCACCTGTCA CAACACTCAA AACAGCACCG TTTTAGATCA TGTTCTTCTC TACATGGACC GTACCGGTTC TAACATTTGC ATGCCCGAGA GGCAAACAAC GACCAAAACT CAACATCAAG ACGATGTCTT ATTCACGCAA CTTCCAAGTC TTGAGACACC CAAATCTGAG AGCCCGGTCG ACAATAGTTT CATGACTTCA AACCAACTTG GTTCTTCTCC GGTTCAAGAG AAAATTATAA CCGGCAGACC TGTTTGCAGT AATTGGGCTA GTCTTGACCG GCTTGTGGCT TGGCAATTGA ACAATGGTCG TCACACGTGT GATCGTAAGA GTTTTGATGA AGAAGAAGAA ATTGGTGATA CTATGATGCA GCGATGGGAT CTTCATTGGA ATAATGATGA TAATGTCGAT CTCTGGAGTA GTTTCACAGA GTCTTCTTCG TCTCCTTCGT CTTTAGACCC TCTTCTTCAT TTATCTGTAT GA
Length1092
Protein Sequence
Protein Residue
Map Locationscaffold_1: 14334342.. 14335948
Download Sequence
A.thaliana
AGI-codeAT1G32770.1
DescriptionNAC domain containing protein 12
TAIR curator summaryEncodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.
Alias[ANAC012][NAC012][NST3][SND1][NAC domain containing protein 12][NAC SECONDARY WALL THICKENING PROMOTING 3][SECONDARY WALL-ASSOCIATED NAC DOMAIN 1]
Gene coexpression
MR
MR Locus Description
8.83176 Ahg897446 protein kinase-related
22.3607 Ahg323016 Cyclin-like family protein
28.1069 Ahg933363
42.9418 Ahg926787
46.3249 Ahg490718 other RNA
54.0833 Ahg941540 Peroxidase superfamily protein
56.8858 Ahg490172 Ubiquitin-like superfamily protein
59.4138 Ahg493853 Exostosin family protein
70.1997 Ahg909257 Protein kinase superfamily protein
71.2461 Ahg926536 DEA(D/H)-box RNA helicase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression