| Annotation |
|---|
| Description | jgi|Araly1|318569|fgenesh1_pm.C_scaffold_3001585 |
| Sequence |
ATGGCGGTTT CTGCAGGGGC TCTAGCTTTT CCTGCTTTAT CCGTTCGCGC CACTCTTAAT CCTGAGAATA AAGATGAACA AGGGAACGTC AGCACTAGCT CTACCCAGAA ATTCACTTAT AGTCGAGCTT CTCCCGCCGT CCGATGGCCA CATTTGAATC TCCGTGAGAC TTATGATTCC AGAGCTTCAA CACCGTCACA ACCTCTTTCT TCTCCGGTTT CTCCCACCGA TACACCGGAT TCAGCTGAAT TCGTCGATTC AATTGGCTCC AGCGAGCATC AAAAGACGAA AGATGAAACC GCCGTGGCGA GTCGGAGAAG GAGAGTGAAG AAGATGAATA AAGTGGCGTT GATTAAGGCC AAGGATTGGA GAGAGCGAGT CAAATTTCTG ACGGATAAGA TTCTAAGCTT GAAACCTAAT CAGTTCGTTG CGGATATCCT CGATGCTCGT CCTGTTCAGA TGACTCCTAC TGATTACTGC TTCGTCGTGA AATCGGTTGG TCAGGAGAAT TGGCAACGAG CTCTTGAGGT TTTTGAGTGG CTCAATCTCC GTCATTGGCA TTCACCTAAT GCTCGGATGG TGGCTGCTAT ACTCGGTGTT TTGGGACGGT GGAATCAGGA ATCGCTTGCG GTGGAGATTT TCACTAGGGC TGAGCCAACC GTCGGAGATA GGGTTCAGGT GTACAACGCA ATGATGGGGG TTTATTCACG TAGTGGCAAG TTTTCAAAAG CACAAGAGCT GCTCGATGCA ATGCGTCAGA GAGGGTGTGT TCCAGACCTT ATTAGTTTCA ATACTCTTAT CAATGCTAGG CTTAAGTCTG GTGGGTTGAC TCCGAATTTG GTTGTTGAAT TATTAGATAT GGTGAGGAAT TCGGGTCTTA GGCCTGATGC TATCACTTAC AACACTCTTC TTAGTGCCTG TTCGCGGGAT TCGAACTTGG AGGGTGCAGT GAAGGTTTTT GAGGATATGG AAGCTCATCG GTGTCAGCCT GACTTGTGGA CTTATAATGC TATGATTTCT GTTTATGGAA GATGTGGGCT TGCTGCTGAA GCTGAGAGGC TCTTCACAGA GTTGGAGCAT AAAGGTTTTT TCCCTGATGC AGTGACATAC AACTCTTTGC TCTATGCTTT TGCCAGAGAG AGAAATACGG AGAAGGTGAA GGAGGTGTAC CAGCAGATGC AGAAAATGGG GTTTGGGAAA GACGAGATGA CTTACAACAC GATCATTCAC ATGTATGGCA AGCAGGGGCA ACTTGATCTT GCGCTACAGC TTTATAAGGA CATGAAAGGT TTGTCGGGTA GGAACCCTGA TGCTATTACT TACACTGTTT TGATCGATTC TCTTGGAAAA GCAAATCGAA GTGTGGAAGC CGCAGCTCTA ATGTCTGAGA TGCTTGATGT TGGGATCAAA CCAACTCTGC AGACCTACAG TGCTCTCATC TGCGGTTATG CCAAGGCTGG GAAGCGAGAG GAGGCTGAGG ATACTTTCAG TTGCATGTTG CGCTCAGGCA CTAAACCTGA TAATTTAGCC TATTCTGTAA TGTTGGATGT ATTACTAAGA GGCAACGAGA CAAGAAAGGC GTGGGTTTTA TATCGTGATA TGATTTCTGA TGGCCATACA CCGTCTCACA GTCTGTATGA GTTGATGATA CTTGGACTTA TGAAGGAAAA CAGGTCAGAT GACGTTCAGA AAACCATCAG AGACATGGAA GAATTGTGTG ACATGAACCC ACTAGAGATT TCATCAGTGC TTGTTAAGGG CGAATGCTTT GATCTTGCTG CTAGACAGTT GAAAGTGGCT ATCACCAATG GTTACGAATT GGAAAACGAC ACTCTATTGT CTATCCTGGG TTCCTATAGT TCATCAGGCA GACATTCAGA AGCGTTTGAG TTACTTGAAT TTTTGAAAGA ACACGCCAGT GGATCTAAAA GACTTATAAA TGAAGCACTA ATTGTTCTAC ATTGCAAGGT TAACAATATA GGCGCTGCTC TAGATGAATA TCTCGCTGAC CCATGTGTTC ATGGCTGGTG TTTTGGCGGT TCCACCATGT ATGAGACTCT ATTACACTGC TGTGTAGCAA ATGAACATTA TGCTGAAGCT TCTCAAGTTT TCTCTGAACT GAGACTATCT GGCTGCGAAC CTTCAGAAAG TGTTTGTAAA AGCATGGTTG TTGTGTATTG CAAGCTTGGC TTTCCAGAGA CAGCTTATCA AGTGGTTAAT CAAGCTGAGA CAAAAGGCTT CCACTTTGCT TGTTCACCTA TGTATACTGA TATCATTGAG GCTTATGGAA AACTAAAGCT ATGGCAGAAA GCGGAGAGTG TGGTTGGCAA CCTAAGACAA GGTGGACGAA CACCTGATCT GAAGACATGG AACAGCTTGA TGTCAGCTTA TGCTGAGTGT GGCTGTTACG AGCGGGCAAG GGCTATTTTT AACACAATGA TGAGGGATGG TCCGTCTCCT ACTGTTGAAT CCATCAATAA GTTACTGCAT GCTTTGTGTG TTGATGGGAG ACTTGAAGAG CTCTACGTTG TTGTTGAAGA ATTGCAAGAT ATGGGCTTTA AGATTAGCAA AAGCTCCATT CTTTTGATGC TTGACGCATT TGCCCGGGCT GGAAATATCT TTGAGGTAAA GAAGATATAC AGTAGCATGA AAGCTGCTGG TTACTTACCC ACGATTCGCC TTTATAGGAT GATGATTGAG CTTCTCTGCA AAGGTAAACG AGTTAGAGAT GCTGAAATTA TGGTCTCTGA AATGGAAGAG GCCAATTTCA AGGTTGAGCT TGCTATATGG AATTCAATGC TGAAGATGTA TACGGTTATC GAGGATTACA AGAAGACAGT TCAAGTATAC CAGAGGATAA AAGAAAGTGG ACTGGAACCA GATGAGACCA CTTACAATAC GCTGATTATA ATGTATTGTA GAGACAGACG ACCAGAAGAA GGGTACTCAC TTATGCAGCA AATGAGAAAT CTTGGTTTGG ACCCAAAATT GGACACATAC AAGAGCTTGA TCTCTGCTTT TGGTAAGCAA AAATGCCTTG AACAAGCTGA ACAACTGTTT GAAGAGCTTC TCTCAAAAGG TTTGAAACTA GACCGTTCAT TTTACCACAC GATGATGAAA ATATCCCGAG ATTCTGGAAG CGACTCTAAG GCAGAGAAGT TATTGCAAAT GATGAAGAAT GCGGGAATAG AACCAACACT TGCTACAATG CATTTGCTTA TGGTTTCATA TAGTTCTTCA GGAAATCCCC AAGAAGCTGA AAAAGTTCTT AGTAACCTGA AAGACACAGA AATGGAACTA ACAACTCTGC CTTATAGTTC AGTTATTGAT GCTTACCTTA GGAGCAAAGA TTATAACAGT GGAATAGAAA GGCTTTTGGA AATGAAGAAA GAGGGCCTAG AGCCAGACCA CAGGATATGG ACTTGCTTTG TAAGGGCGGC GAGTTTCTCC AAGGAAAAAA GCGAAGTCAT GTTGCTGCTT AAAGCTCTTC AAGATATTGG TTTTGATATT CCTATCAGGC TTTTAGCTGG AAGACCTGAG TTGCTAGTTT CTGAAGTGGA TGGATGTTTC GAGAAACTGA AATCCATAGA GGACAATGCT GCTCTCAATT TTGCGAATGC TCTTTTGAAT CTTCTCTGGG CGTTTGAACT CAGAGCTACT GCATCATGGG TTTTCCAATT GGCAATCAAA AGGGGTATCT TCAGTCTTGA TGTTTTTAGG GTGGCGGACA AGGACTGGGG TGCGGATTTC AGAAGATTGT CGGGAGGTGC AGCGCTTGAT GCATCACTCG AAGGCTACCC AGAGTCTCCG AAGTCAGTTG TCTTAATCAC AGGGACCGCA GAGTACAACG GTGTATCCCT TGATAAAACG CTAAAGGCGT GTCTTTGGGA AATGGGTTCT CCATTTCTCC CCTGCAAGAC GAGAACGGGA CTGCTAGTGG CCAAAGCTCA CTCTCTCAGA ATGTGGTTGA AGGACTCGCC GTTCTGCTTC GACTTGGAGC TAAAAGACTC AGTGTCTTTA CCAGAATCAA ACTCGATGGA CCTGATTGAC GGGTGTTTCA TAAGACGTGG ACTTGTACCT GCGTTTAACC ACATCAAAGA GAGACTTGGT GGATTTGTGT CACCAAAGAA GTTTTCGAGA CTGGCGTTGC TACCAGACGA GATGAGAGAA CGAGTGATAA AGACAGATAT AGAAGGACAT AGACAGAAGT TAGAGAAGAT GAAGAAGAAG AACAAAAGAA ATGAAACGAA TGGTGTTAAC ACTCGAAGGA AGTTCGTCAG AAGTAAGTGA |
| Length | 4290 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 7292270.. 7297002 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G18110.1 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| TAIR curator summary | |
| Alias | [EMB1270][embryo defective 1270] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 15.2315 |
Ahg929719 | CRS1 / YhbY (CRM) domain-containing protein |
| 15.3297 |
Ahg326886 | DEAD box RNA helicase (RH3) |
| 18.412 |
Ahg943476 | translocon at the outer envelope membrane of chloroplasts 159 |
| 18.868 |
Ahg480077 | RNAse E/G-like |
| 23.6643 |
Ahg329483 | Pentatricopeptide repeat (PPR) superfamily protein |
| 23.6854 |
Ahg487264 | pentatricopeptide (PPR) repeat-containing protein |
| 26.0768 |
Ahg351718 | ATPase family associated with various cellular activities (AAA) |
| 27.3861 |
Ahg490089 | tRNA synthetase class I (I, L, M and V) family protein |
| 27.5681 |
Ahg938915 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 27.9285 |
Ahg889110 | heavy metal atpase 3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|