| Annotation |
|---|
| Description | jgi|Araly1|480077|fgenesh2_kg.3__2778__AT2G04270.1 |
| Sequence |
AAAACTACAC ACGTGTGATA CAATATCCAC CGCACGTGTC ACTGCAAGGC GCCAAAGCCA CACCATTATC CTTCCGTTAT CGTCATCTTC TCCACCTCCC CGGAATCCAA TTCCGCTTGT CTCGTCCCAC CGCTCCGTGT ATTGATGAAC CCATAGCAAC TCAACACCAC CATGGATGTT ACTGAAGTTC CATGGCGTCG TCTTCCTCAA ATTTCCGTTT CTTCACGCGC CTCGTGGCTT GTTACTTCTG GGTTTCCTGT TTCTTCATAT ATGTTCTCTC ATGTTGAGCG TGGAAAGTCG TTTAGGCTCA CCTTGTGCTT TGGGGTCTCT CGTGCAAGGT CTGCTATTGT AAGTGTACAA CAAGAACAGC CAGCTAGTCG TAGTAAAGGA TTATGCGAGG TTGTTTGGAT TGTGGAAGCT GATCTTGCAC CTAATGAACA TCTCTTCGTT ACTGGAGATC CTTCTGCTTT AGGTAGCTGG GAGCCAGACT GTGCAATCTC AATGTATCGT ACTGAAAATG ATAATGAATG GGAAGCTAAA GTCAAGATTG CTTCTGGTGT AAATTTCAGG TATAATTATT TTTTAAAAGC TGGATACGGA TCTTCATCTG ATGTCATCTG GAGACCAGGG CCACAATTTT CGTTATCAGT TCCTTCTTCT GTCAATCGAG AGAGAAAAGT AGTTATAAGG GATTCATGGA TGAGTGTTTC CTCAAGATCA CAAGAATCCT ACGTATGGGG GTCTTGGATC GATGATGCTT ACCTTTTTCC AAATTCTGTT ACCTCAGCTC AAAGTGAAGG TAACATCTCT ACTTCTGATA GTGCTATAGA AGTCCCGAGA ACACTTCTGA ATGATAAGCA AGGAGGAAAT GAATCTTTCT TCTGTGATGA GCTTGCAGCC TTTTCGTCAG AGAACTCAAA CTTAAGTGCG TTATTTTCTG ACAACTATCA GCCTATCGAG GAACCGTGGT TGATTCAAGA CTCTATTACC TTGCAACATG CAAGGAATAT GCAGACTGAC AGCGAACAAG ATGTTGAAAG CTGTGATGAA AATGAAAACA GCTTACATAC TGATGAACAA AATCACCAGC TGACAGAGAC TCTCTTACCT GATGGTGGAT TTTTCCAACC GGAATCCATT TCTACTACGA TACTGATCAA TTCTTCTATA TGTACGGTGC AAAGGATTGC TGTATTGGAA GGTGAAAAGC TGGTCGAGTT ATTGTTGGAA CCAGTTAAGA CCAATGTGCA GTGTGATAGT GTTTACCTGG GCGTGATCAC TAAGTTTGTG CCCCATATGG GTGGTGCATT TGTGAATATT GGAAGTGCTA GACATTCTTT CATGGACATT AAGTCAAACA GGGAACCATT CATATTCCCT CCATTCTGTG ATGGATCGAA GAAGCAAGCA GCTGATGGTT CTCCGATCCT CTCTATTAAT GACATTCCAG CTCCCCATGA AATTGAACAT GCTTCCTATG ACTTTGAAGC CAGTAGTTTA TTAGACATTG ATTCAAATGA CCCTGGGGAA TCTTTTCATG ATGATGACGA TGAGCATGAA AATGATGAAT ATCATGTCTC AGATGCTCTA GTTGGATTAG TTAATGGAAC TGTAGTGAAC CATGGCGCTG TGGAAGTTGG ATCTGAGAAT GGCCTTATTC CTCTGGAGAG AGAACACTCT GTAGATTCCC TCGTTTCTAA TCCATCAGTT CCAAAAACTT CTAAGGCGAT GCCGTCTAAA GATAATAAGT GGATTCAAGT TCGGAAAGGC ACCAAGATAA TTGTGCAAGT TGTTAAAGAG GGCCTCGGTA CGAAAGGTCC AACTCTTACT GCTTACCCGA AACTGAGAAG TAGATTCTGG GTATTACTGA CTCGATGCAA ACGAATTGGA GTGTCGAAAA AAATTTCGGG AGTTGAGAGA ACCCGGTTAA AAGTTATAGC AAAAACATTG CAGCCTCAAG GTTTTGGACT GACTGTAAGG ACTGTGGCTG CAGGCCATTC TCTAGAAGAA CTGCAGAAAG ACTTAGAAGG TCTGCTTTTA ACGTGGAAGA ACATTACAGA TGAAGCAAAA TCTTCAGCTC TTGCTGCAGA TGAAGGTGTG GAAGGAGCCA TTCCAGCGCT GCTACATAGA GCAATGGGTC AAACACTCTC AGTTGTGCAG GACTATTTCA ATGACAAGGT TGAGAAGATG GTGGTTGACT CTCCTAGGAC ATACCACGAG GTCACACACT ACCTGCAGGA TATGGCACCT GATCTTTGTA ATCGAGTCGA ATTGCATGAT AAGGGTATAC CTCTTTTTGA TTTATACGAC ATTGAGGAGG AAATCGAAGG TATTCTCAGT AAAAGAGTTC CACTTTCCAA TGGAGGTTCT TTAGTGATTG AACAAACTGA GGCGTTGGTC TCTATTGATG TGAACGGAGG ACATGGAATG TTTGGTCAGG GTAATTCACA GGAGAAAGCT ATTTTAGAAG TTAATCTTGC TGCTGCCAGA CAAATTGCAA GGGAGATTCG GCTGAGAGAT ATTGGCGGTA TCATTGTGGT AGATTTCATT GACATGGCAG ATGAATCAAA TAAGAGACTT GTTTATGAAG AGGTTAAGAA AGCAGTTGAG AGAGATAGGT CACTGGTAAA AGTATCAGAA CTGTCTAGAC ACGGACTCAT GGAAATAACA AGAAAAAGGG TTCGACCGAG TGTAACATTC ATGATCAGTG AACCTTGTTC TTGCTGTCAT GCAACTGGTA GAGTGGAGGC ACTGGAGACT TCCTTCTCAA AAATTGAACA AGAGATTTGT CGGCAGCTCG CAAAGATGGA GAAAAGAGGA GACCTAGAAA ACCCCAAGTC TTGGCCAAGA TTCATATTGC GGGTGGACAG TCATATGTCA AGCTTCTTGA CTACTGGGAA GAGGACGAGG CTTGCAATCC TCAGTAGTTC CCTGAAAGTA TGGATTCTCT TAAAGGTTGC TAGACATTTC ACCAGAGGAA CCTTTGAGGT TAAACCGTTC ATGGATGAGA AGACGGTAAA CGAAAGACAG CATCAAGTTG CTATTTCACT GCTCAAGAAA GCTGACGCCA TAGCAGACTC CTCAGCCAAG AAGAAGCTCA CTCTTATTCC CAAGAAGGAA AAGACCAGTG GTAAACATAG ACGATGAGCA TCACTTTTGT TAGTTGTCTC AAATAATACT GTACCGAATC AATTATTGTG TATCAATATC ATCTTCTTC |
| Length | 3219 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 12463690.. 12468875 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G04270.5 |
| Description | RNAse E/G-like |
| TAIR curator summary | Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose. |
| Alias | [RNE][RNEE/G][RNase E][RNAse E/G-like] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.7082 |
Ahg899665 | extra-large G-protein 1 |
| 13.5647 |
Ahg478119 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 17.4356 |
Ahg943476 | translocon at the outer envelope membrane of chloroplasts 159 |
| 18.868 |
Ahg318569 | Pentatricopeptide repeat (PPR) superfamily protein |
| 19.1311 |
Ahg903252 | FtsH extracellular protease family |
| 25.7876 |
Ahg473985 | Protein of unknown function (DUF760) |
| 28.775 |
Ahg488263 | Rubisco methyltransferase family protein |
| 37.229 |
Ahg487250 | Zn-dependent exopeptidases superfamily protein |
| 41.5331 |
Ahg491794 | Alkaline-phosphatase-like family protein |
| 42.5206 |
Ahg482552 | mitochondrial substrate carrier family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|