Detail



ID : Ahg319991

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|319991|fgenesh1_pm.C_scaffold_4000048
Sequence
ATGATGATGA TAATGGGAAG AAGGTGTGAA GATTGTGGTA ATCAAGCAAA GAAAGAGTGT TTGTACATGA GATGCAGAAC TTGCTGCAAA TCCAAAGCCT TTCATTGCCA AACTCACATC AAGAGCACTT GGGTTCCTGC CTATAGAAGA CCTCATCACA AACACCAATC GCAATCGCAA CCGCCCTCTA CTAGTAACCC AAAACGTGTA CAAATTCGCA CTACTCTGGG ACATTTTCCG GCAGAGTTGA GTTCTCTGGC TGATTTCCGA TGCGTAAAAG TGAGTTCAAT CGACGATGGA AAGGAGCAAT ACGCTTATCA GACGACGGTG AACATCGGAG GACATGTTTT CAGAGGGATT CTTCACGATC AAGGACTCGA GGAAGGGATG ATAGATCATC ATTATAATAA AAATAGTAAT AATCATCAAG AGTCACTTCA TCCTTCAACA TCTTCATGTC CCTTGATGAC CACTAGTCCT TTTACCGATT TCATGTCCCG TGCCCAATTT TCTTCGGTCC TAAGAAGATA G 
Length531
Protein Sequence
Protein Residue
Map Locationscaffold_4: 274651.. 275535
Download Sequence
A.thaliana
AGI-codeAT2G21400.1
DescriptionSHI-related sequence3
TAIR curator summaryA member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Alias[SRS3][SHI-related sequence3]
Gene coexpression
MR
MR Locus Description
6.48074 Virus1738
9.05539 Ahg924826
14.2829 Ahg950537 Subtilase family protein
17.8885 Ahg925867
19.3391 Ahg945404
19.5192 Ahg359045
20.199 Ahg915726
20.4206 Ahg913545 Cellulase (glycosyl hydrolase family 5) protein
23.0217 Ahg475744 DNA-binding storekeeper protein-related transcriptional regulator
27.037 Ahg949535
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression