Detail


ID : Ahg322085

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|322085|fgenesh1_pm.C_scaffold_4002142
Sequence
ATGGAGGCGA GAATCGGCCG ATCTATGGAG CACCCATCTA CGCCGGCGAT TACTGCTCCG GCGCCGGTTC CTCCACCATC AACGCGGCGG CCGAGAGTAA GAGAAGTGAG CTCTAGATTC ATGTCTCCCG TTTCTTCGTC GTCATCGTCA TCTTCCTCCT CTTCCGCCGG AGATCTCCAT CTATTGACTT CAAATTCTCC CAGGCATCAT CACCAACACC AGAATCAACG GTCGACTTCG GCTCAGAGGA TGAGACGGCA GTTAAAAATG CCAGAGGGCG ACGAGAATCG TCCTTCCGAG ACGGCGCGTA GCTTAGACTC GCCTTTTCCT CTTCAACAAG TCGACGGAGG TAAAATCCCA AAGCAGCAGA TACGATCTAA GCCGTTGAAA GAGAACGGTC ACCGTCTCGA CACACCAACG ACGGCGATGT TGCCGCCTCC GTCTAGATCG CGGCTGAGCC AACAGCGTCT GCTCACCGCC TCCGCTGCGA CTAGGCTTCT CCGATCAAGC GGGATCTCGT TATCTTCCTC CACAGACGGT GACGAAGACA ACAACAACAA CAGAGAGATT TCCAAATCCA ACGGCTCGGA TCTGTTGCCA ACAATCAGAA ACCAAGCAAA GCTCTTCAAC AATCCCACCG CTTCACCTCT TTCTCGATCC CTGAGTTCTG ATGATTCTTC CTTGTTTCGA GATGTAAGAG CTTCATTGTC GCTTAAAAAT GGTGTTGGTT TGTCATTGCC TCCGGTTGCT CCTAATTCGA AGATTCAAGC TGATACAAAG AAACAGAAGA AAGTGTTAGG ACAACAAGCA GATATACATT CTTTGAAACT GCTCCATAAC CGTTACTTGC AATGGCGATT TGCAAATGCA AATGCTGAGG TCAAAACACA ATCCCAGAAA GCACAAGCTG AGAGAATGTT TTATTCACTT GGTTTGAAAA TGTCGGAGTT GTCTGATTCT GTACAGAGGA AACGCATAGA ACTCCAACAT TTACGGAGAG TTAAAGCTGT CACGGAGATT GTAGAGTCTC AAACTCCTTC TTTGGAGCAA TGGTCTGTTC TTGAAGATGA ATTCTCAAAT TCTCTATTGG AAACAACTGA AGCTTTATTG AATGCTTCAT TGCGGTTGCC TCTCGATTCA AAAATCAAGG TTGAGACTAA AGAGTTAGCA GAAGCCCTCG TTGTTGCTTC AAAGTCTATG GAAGGCATTG TGCAAAACAT TGGAAACCTT GTACCTAAGA CACAAGAGAT GGAGACTTTG ATGTCGGAAC TAGCAAGAGT AAGCAGCATA GAGAAAGCAT CAATAGAAGA TTGCAGAGTT GCAATGCTTA AAACACATTC ATCACAGATT GAAGAATGCT ATCTTAGAAG TCAGCTTATC CAGCACCAGA AGAAGTGCCA TCAGCAAGAG TGCACAACTT CTGTTTGA
Length1428
Protein Sequence
Protein Residue
Map Locationscaffold_4: 20465479.. 20467504
Download Sequence
A.thaliana
AGI-codeAT2G44190.1
DescriptionFamily of unknown function (DUF566)
TAIR curator summaryEncodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.
Alias[EDE1][EMB3116][QWRF5][ENDOSPERM DEFECTIVE 1][EMBRYO DEFECTIVE 3116][QWRF domain containing 5]
Gene coexpression
MR
MR Locus Description
20.1494 Ahg944667 ataurora1
22.5832 Ahg917240
26.533 Ahg480796
28.4781 Ahg350051 glucan endo-1,3-beta-glucosidase-like protein 3
33.9411 Ahg471862
35.7071 Ahg935782 Kinase interacting (KIP1-like) family protein
39.598 Ahg317466 NPK1-related protein kinase 3
40.4351 Ahg472331 cyclin-dependent kinase B2;2
41.1096 Ahg313236 Plant protein of unknown function (DUF936)
41.821 Ahg493301 ARM repeat superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression