Detail



ID : Ahg323349

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|323349|fgenesh1_pm.C_scaffold_5000893
Sequence
ATGGATATGC TTACCACCAT TCTCAATCTT CTTCTACCTC CTCTTACCAT CAGTTTCCTT GTCTTCTTTT ACCCATTTTA TGTTTTGATC AAACTTGTGC TTTGTCTTCA TAAGTACCTT CACTTCGAAA ACGTAGCCAG AAAAGTAGTT CTAATCACCG GAGCTTCCTC CGGCATCGGA GAGCATGTGG CATACGAGTA CGCAAAGAAA GGAGCATATT TGGCTCTTGT TGCTCGAAGA AGGGATCGTC TAGAGATTGT AGCTGAAACT TCACGTCAAT TAGGATCTGG TAATGTCATC ACCATACCTG GTGATGTTTC TAATGTTGAG GACTGCAAGA AGTTCATCGA TGAGACGATT CGTCATTTCG GAAAACTAGA CCACCTGATC AACAATGCTG GTATATTTCA AACTGTTCTT TTCGAAGATT TCACTCAAAT TCAAGACGCA AATCCTATAA TGGACATCAA CTTTTGGGGC ACAACATACA TCACTTATTT CGCAATTCCT CATCTTCGAA AGAGTAAAGG AAAAATCGTC GCGATTACAT CTGGTTCAGC AAATATACCT TTGCCATTGG CAAGCATATA TGCAGCAAGC AAAGCAGCCT TATTAAGATT CTTTGAGACA TTAAGAATAG AGCTAAGTCC GGATATCAAA ATAACAATTG TTCTCCCAGG AGTTGTATCA ACAGATATGA CCACACCTCA CTGTATGGAA AAGTATGGTT CAGATTTTAT TCTATCGGAA TCAGTGAGTA AATGCGCAAA AGCAATCTTC AAAGGTATTG GCAGAGGAGA TGCATATATA GAAGAACCAT CTTGGATGAA ATGGTTGTTT ATAATGAAAA ATGTATGTCC TGAAATCGTT GATTACGGTC TCAACTTTTT ATTTGTTAGT TATCTCAAAC CTTATTTCAA GCGTGATTGA 
Length930
Protein Sequence
Protein Residue
Map Locationscaffold_5: 12505367.. 12507421
Download Sequence
A.thaliana
AGI-codeAT3G47360.1
Descriptionhydroxysteroid dehydrogenase 3
TAIR curator summaryEncodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.
Alias[ATHSD3][HSD3][HYDROXYSTEROID DEHYDROGENASE 3][hydroxysteroid dehydrogenase 3]
Gene coexpression
MR
MR Locus Description
6.7082 Virus0426
6.7082 Virus1295
6.7082 Ahg923468
12.083 Ahg933883 Ubiquitin-associated (UBA) protein
14.9666 Ahg949588
15.4919 Ahg912127
17 Ahg481189
33.0454 Ahg321472
33.0454 Ahg897389
33.0454 Ahg936403
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression