Detail


ID : Ahg324018

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|324018|fgenesh1_pm.C_scaffold_5001562
Sequence
ATGAGTTCTT CAAACTCCTC CTCCGCTGTC AGATCGTCGG CGAAACACGC GGCGGAGCGA ATTCAGCAAC ACTTGCCTCC CAACAGCAAT CACGCTGTAT CTCTCTCTTC TTCTTCCTTG AATTTACCTT CTAGAACATC TATCATCGCT CCCGGAGTTG CACACTCTTC TCGCCCTAAA GATCGACCCT CCGCTTCCTC TATCTCCAAC GCTTCCTCCG TCTCCGCCTC TTCTCCTTCT ACACGCCGCT CCGGCACTCC CGTCCGCCGA TCCCAGTCCA AAGACTTCGA CGACGACAAT GATCCCGGGA GGGTAAGAGT TTCTGTAAGA GTTCGACCTC GAAACGGAGA GGAGCTTATC TCGGATGCTG ATTTTGCTGA TCTTGTTGAG TTACAACCAG AAATAAAGCG GCTTAAGTTA AGGAAGAACA ACTGGAATTC TGAGTCCTAT AAATTTGATG AAGTCTTTAC AGACACAGCT TCGCAAAAGC GTGTCTATGA AGGAGTAGCA AAACCTGTCG TCGAGGGTGT TCTGAGTGGA TACAATGGTA CCATTATGGC TTATGGTCAA ACTGGCACCG GTAAAACTTA CACGGTAGGA AAAATTGGTA AAGATGATGC AGCTGAGCGT GGTATTATGG TTAGAGCTCT GGAGGACATT CTTCTCAACG CATCTTCTGC TTCTATCTCC GTCGAGATCT CTTATTTGCA GCTATATATG GAAACTATAC AAGATCTTCT TGCACCTGAG AAAAATAACA TTTCAATCAA TGAGGATGCT AAGACTGGGG AAGTATCAGT GCCAGGCGCT ACAGTAGTTA ACATTCAAGA TTTAGACCAT TTCTTGCAGG TTTTGCAAGT CGGTGAGACA AACCGTCATG CAGCAAATAC AAAGATGAAT ACAGAATCCT CACGTAGTCA TGCCATTCTT ACGGTTTATG TTAGGCGGGC TATGAATGAA AAGTCTGAAA AGGCAAAACC TGAATCATTG GGAGATAAAG CCATTCCTAG AGTTAGAAAG AGCAAACTTC TAATTGTTGA TCTTGCTGGT TCAGAAAGAA TAAATAAATC TGGCACTGAT GGCCACATGA TTGAGGAGGC AAAATTCATC AATCTTTCAC TGACATCCCT GGGAAAATGC ATAAATGCGT TAGCTGAAGG CAGTTCTCAT ATACCAACAA GAGATTCTAA GCTAACAAGG CTTCTTCGTG ATTCTTTTGG GGGTTCTGCG AGGACTTCAC TTATAATAAC AATTGGGCCA TCTGCACGGT ATCATGCAGA AACCACTAGC ACAATAATGT TTGGACAAAG GGCAATGAAA ATAGTAAACA TGGTCAAGCT TAAAGAAGAA TTTGATTATG AGAGTTTGTG TCGGAAGCTT GAGACTCAGG TGGACCATCT TACTGCAGAA GTTGAAAGAC AAAACAAACT AAGAAATAGT GAAAAACTTG AGTTAGAAAA AAGATTGAGA GAATGTGAAA ACTCCTTCGC TGAAGCAGAA AAGAATGCGG TTACAAGGTC CAAGTTCCTG GAGAAGGAAA ACACCCGCTT GGAGCTCAGC ATGAAAGAAC TTTTGAAGGA ATTACAACTG CAGAAAGATC AGTGTGATCT AATGCATGAC AAAGCCATAC AATTAGAGAT GAAACTGAAA AATACCAAGC AGCAACAGCT GGAAAATTCA GCATATGAGG CAAAACTTGC AGATGCCAGT CAAGTATATG AGAAAAAAAT TGCTGAATTG GTTCAGCGGG TTGAGGATGA ACAAGCCCGG TCAACAAACG CCGAGCATCA ATTGAATGAA ATGAAAAATA TTTTGAGTAA ACAGCAGAAG TCTATTCATG AACAAGAGAT GGGCAACTAT CAATATCAAA GGGAACTTGC GGAAACCACT TACACATATG AATCTAAAAT TGCAGAGCTG CAGAAGAAAT TAGAAGATGA AAATGCTCGG TCTAACGCTG CAGAAGAGCA ACTTAGACAA ATGAAAAGAC TTATAAGCGA TCGCCAAGTT ATATCACAGG AAAATGAAGA GGCAAACGAA CTCAAGATAA AATTAGAAGA ACTTTCACAA ATGTATGAAT CGACAGTAGA TGAACTCCAG ACAATGAAAT TAGACTATGA TGACCTGCTC CACCAAAAGG AAAAACTTGG TGAAGAGGTT CGAGATGTGA AGGAAAGGCT CCTTTTGGAA GAAAAGCAGC GAAAGCAAAT GGAGAGTGAG CTTTCGAAAC TAAAGAAGAA TCTAAGGGAA AGTGAAAATG TTGTTGAGGA AAAGCGATAT ATGAAGGACG ATCTTTCAAA AGGATCATCA GAATCTGGAG CTCAAACTGG CTCACAGAGA TCACAGGGGT TAAAAAAGTC GTTATCTGGT CAGAGAGCTA CCATGGCGAG ACTTTGTGAA GAAGTCGGAA TTCAGAAGAT CTTACAACTC ATTAAGTCTG AAGACTTGGA AGTTCAAATT CAAGCAGTAA AAGTGGTTGC TAATCTAGCC GCTGAAGAGG CTAATCAGGT AAAGATTGTG GAGGAAGGGG GTGTAGAAGC TTTGCTTATG CTAGTCCAGT CATCTCAGAA TTCAACGATT CTCAGGGTGG CTTCTGGTGC AATTGCTAAT TTAGCAATGA ATGAGAAGAG TCAAGATCTT ATAATGAATA AAGGAGGTGC TCAACTCCTA GCAAAGATGG TGACTAAAAC AGACGACCCA CAGACTCTAA GAATGGTAGC TGGTGCACTT GCCAATTTAT GCGGGAACGA GAAGTTTCTT AAGCTGCTGA AAGAAGAGGA AGGTATCAAG GGACTACTCA CGATGGCACA ATCTGGAAAC ATAGATATCA TTGCTCAAGT GGCAAGAGGG ATGGCAAATT TTGCAAAGTG TGAAACTCGA GAAATTATGC AAGGGCGTAG AAAAGGTCGT TCCCTTCTCT TGGAAGAGGG TGCTCTTGAA TGGTTGACTT CAAACTCACA TATTGATTCA GCATCAACAC AACGTCACAT CGAGCTTGCA CTTTGCCATT TAGCTCAAAA TGAGGAAAAT GCAAATGATT TCAGAAGAAC AGGAAGCGTG ACAGAGATTG TAAGAATATC TGTGGAGTCG AGTAGAGATG ATATTCGCAG TTTAGCAAAG AAGATACTCA AAACAAACCC TTACTTCTCA AGCTGA
Length3156
Protein Sequence
Protein Residue
Map Locationscaffold_5: 16266570.. 16272617
Download Sequence
A.thaliana
AGI-codeAT3G54870.1
DescriptionArmadillo/beta-catenin repeat family protein / kinesin motor family protein
TAIR curator summaryArmadillo-repeat containing kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth.
Alias[ARK1][AtKINUc][CAE1][MRH2][ARMADILLO REPEAT-CONTAINING KINESIN 1][Arabidopsis thaliana KINESIN Ungrouped clade, gene A][CA-ROP2 ENHANCER 1][MORPHOGENESIS OF ROOT HAIR 2]
Gene coexpression
MR
MR Locus Description
17 Ahg478320 GDSL-like Lipase/Acylhydrolase superfamily protein
18.7617 Ahg485653 purple acid phosphatase 21
29.8998 Ahg472269 laccase 8
32.6803 Ahg493352 HXXXD-type acyl-transferase family protein
34.641 Ahg475808 cytochrome P450, family 735, subfamily A, polypeptide 2
40.025 Ahg917939 floral meristem identity control protein LEAFY (LFY)
48.2079 Ahg358465 F-box and associated interaction domains-containing protein
48.9898 Ahg917658 subtilase 4.13
51.9808 Ahg945592
52.3068 Ahg338146 KNOX/ELK homeobox transcription factor
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression