Detail



ID : Ahg325180

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|325180|fgenesh1_pm.C_scaffold_6000400
Sequence
ATGTTTTATT CTCACCAGCT TCTAGCTCGA AAAGCTCCGT TGGGTCAGAT ATGGATGGCC GCTACGTTGC ACGCGAAGAT CAATCGGAAG AAACTAGACA AGCTCGATAT CATTCAAATC TGCGAAGAGA TTTTGAATCC GTCGGTTCCG ATGGCTCTTA GACTCTCTGG GATTCTTATG GGTGGTGTTG TGATTGTTTA TGAGAGGAAA GTGAAGCTCC TATTCGATGA TGTTAATCGC CTTCTGGTGG AAATTAATGG AGCTTGGCGA ACAAAAGCTG TTCCGGATCC CACCTTACTA CCTAAAGGAA GAACCCATGC CAGGAAAGAG GCTGTTACAT TGCCTGAGAA CGAAGAAGCT GATTTTGGAG ATTTTGAACA GACTCGTAAT ATTCCTAAAT ATGGCAATTA CATGGATTTT CAGCAGACTT TTATTTCCAT GAGGTTAGAT GAATCCCATG TTAACAATAA CCCCGAGCCA GAAGATCTTG GACAGCAGTT CCATCAAGCT GATGCCGAGA ATATCACACT CTTTGAGTAT CATGGTTCAT TCCAGACCAA CAATGAAACA TATGATCGTT TTGAAAGATT TGACATCGAA GGAGATGATG AAACTCAGAT GAACTTCAAT CCAAGAGAAG GCGCTGAAAT ACCTACAACT CTCATCCCAT CACCACCTCG TCATCATGAC ATTCCCGAAG GAGTCAACCC CACAAGCCCT CAGCTCCACG AGCAACAGGA GCGTCGTAGG GACGGATTTG CTGAGCAGAT GGAGGAACAA AACATACCGG ACAAAGAGGA ACATGATAGA CCACAACCAG CAAAAAAAAG AGCAAGAAAG ACAGCTACTT CAGCGATGGA TTATGAGCAG ACTATTATCG CTGGTCACGT TTACCAGTCA TGGCTCCAGG ATACTTCTGA CATTCTCTGT AGGGGGGAAA AGAGAAAGGT TCGAGGAACT ATCCGGCCAG AAATGAAAAT TTTCAAACGT GCGAATATGC CACCTACACA ACTCTTTGAA AAGCATGTGG AAAGTTCTTA CCCGCCTCAG CTTTACGAGC TTTGGTCAAA GAATACTCAA GTTCTTCAAA CCTCATCATC TGAAACTCGA CGTCCTGATC TCTGTGCAGA ACAATCTCCA GGGTTTGTTC AGGAGAGAAT GCAGAACCAC CATCAAACAG ACCATCATGA GCGCAGTGAC ACAAGCTCCC AAAATCTTGG TAGTCCCGCA GAAATACTCC GGACAGTTCG TACTGGGAAA GGTGCTTCAG TAGAAAGCAT GATGGCTGGA TCTCGAGCAA GTCCTGAAAC TATTAACCGC CAGGCTGCTG ATATTAATGT CACGCCTTTC TATTCTGGAG ACGACGTGAG ATCCATGCCT AGCACACCAT CCGCACGTGG AGCAGCTTCA GTAAACAACA TAGAGATCAG CTCTAAAAGT CGCATGTTTG ATAGAAAAAG GCCAACTTCC TCACCAAGAA GAGGACTCGA ACCAGTAGCG GAAGAGAGAC CATGGGAGCA CCGTGAATAT GACTTTGAGT TTTCAATATT ACCTGAAAAA CGTTTCACAG CCGATAAAGA AATACTATTT GAAACTGCAT CTACACAGAC TCAAAAGCCA GTGTGCAATC AATCAGACGA GAAGATAACA GATAGCATCA AAAGTCATCT GAAGACACAC TTTGAAACAC CTGGAGCTCC TCAAGTGGAA TCTCTTAACA AGCTCGCTGT TGGAATGGAC AGAAACGCTG CAGCTAAACT CTTCTTCCAA TCCTGTGTGT TAGCGACTCG CGGAGTCATT AAGGTAAACC AAACACAGCC TTATGGGGAC ATTCTCATTG CAAGAGGACC CAACATGTAA 
Length1860
Protein Sequence
Protein Residue
Map Locationscaffold_6: 1924049.. 1928567
Download Sequence
A.thaliana
AGI-codeAT5G05490.1
DescriptionRad21/Rec8-like family protein
TAIR curator summaryEncodes a RAD21-like gene essential for meiosis. Encodes a 627 a.a. protein that is slightly longer in the N-terminus than SYN1 BP5.
Alias[AtREC8][DIF1][REC8][SYN1][DETERMINATE, INFERTILE 1][SYNAPTIC 1]
Gene coexpression
MR
MR Locus Description
16.2481 Ahg337708
32.6803 Ahg315021 Polyketide cyclase/dehydrase and lipid transport superfamily protein
45.1664 Ahg924238
54.5802 Ahg928020 F-box and associated interaction domains-containing protein
59.2453 Ahg492665 root hair specific 14
81.0309 Ahg493354 cytochrome P450, family 702, subfamily A, polypeptide 6
81.0432 Ahg473826
82.5954 Ahg352619
94.6573 Ahg938956 protein kinase family protein
99.0454 Ahg913186
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression