| Annotation |
|---|
| Description | jgi|Araly1|326110|fgenesh1_pm.C_scaffold_6001330 |
| Sequence |
ATGATAAGCC TTAGGTTTCA ACCAAGCACC ACCGCCGGTG TTTTATCGGC GTCGGTGAGC CGCGCCGGTT TTATCAAGAG GTGCGGTTCG ACTGAACCGG GAAGGGTTGG CCGGTTTGCA ACAGTGGCGA TGGCGGCGAG TCCTCTCGAA ATCTGCGTCA AAGCTTCTAT CACCACACCC AACAAGCTCG GAGACTGCCC TTTTTGCCAA AGGGTGTTGC TGACATTGGA GGAGAAGCAT GTTCCTTATG ATATGAAAAT GGTGGATTTG AGTAACAAGC CAGAATGGTT CTTGGAAATT AGTCCAGAAG GTAAAGTCCC AGTCGTGAAG TTTGATGAGA AATGGGTTCC GGATTCAGAT GTTATAACAC AGGCTCTAGA AGAGAAGTAT CCTGAGCCTC CTCTTGCTAC CCCACCTGAA AAGGCTTCAG TTGGGTCGAA GATATTTTCC ACATTTATCG GTTTTCTCAA GAGCAAAGAT CCAGGAGATG GAACTGAGCA AGTTTTGTTG GATGAGCTTA GTATATTCAA CGATTATCTC AAGGAAAATG GCCCATTCAT AAATGGAGAG AAGATTTCAG CAGCAGATTT GTCCTTGGCA CCAAAGTTAT ACCACATGAA GATTGCATTG GGGCATTACA AGAACTGGTC TGTTCCAGAT TCGCTTCCTT TCGTCAAATC CTACATGGAG GGAATCATTC GCGAACACAC GGGCGGAAAC AGAGGATGTA ATTGCTGGTT GGAGACCAAA GGTGATGGCA ATTGTATATT CGTATTTACA TTTGAATTCC TCTTTTGTAT TTCAGTTGCG GCCTCAGGAA ATAATGTCTT TACTTCCCCT GAGACATCAA AGACCTTTGA GTTTTCCTCC GAGGAGAAAA TATACAAATG GTGGGAGTCG CAAGGCTACT TCAAACCTAA TTTTGACCAA GGAGGCAGTC CTTTTGTGAT ACCAATGCCA CCTCCTAATG TTACTGGTTC TCTTCACATG GGCCATGCAA TGTTTGTCAC TCTTGAGGAT ATTATGGTTC GATACAATAG GATGAAAGGG AGACCAACAC TTTGGCTTCC CGGGACTGAT CATGCTGGTA TTGCCACTCA GTTGGTCGTG GAAAAGATGC TAGCGTCAGA AGGCATTAAG AGAGTGGATT TAGGTAGAGA TGAGTTTACC AAAAGAGTCT GGGAATGGAA GGAGAAGTAT GGCGGAACCA TCACAAATCA GATTAAAAGA CTGGGTGCTT CTTGTGATTG GAGTAGAGAG CGCTTCACTC TTGATGAGCA ATTGAGTCGA GCTGTGGTCG AGGCTTTTGT GAAGCTTCAT GACAAGGGGT TGATATATCA AGGATCTTAC ATGGTCAACT GGTCCCCTAA TTTACAGACT GCTGTTTCAG ACTTGGAAGT AGAATATTCA GAGGAACCTG GGTTTCTATA CCATATTAAA TACCGTGTAG CTGGAAGTCC TGATTTTCTT ACTATAGCAA CGACTCGTCC AGAGACATTG TTTGGTGACG TGGCCCTTGC CGTGCATCCT GAGGATGATC GTTATTCAAA ATATGTTGGT CAGACAGCAA TTGTACCTAT GACATATGGT CGTCATGTCC CAATTATTGC TGATAAGTAT GTTGATAAGG ATTTTGGGAC TGGTGTTCTG AAGATAAGTC CTGGGCATGA TCACAACGAT TACCTTCTTG CAAGAAAGCT AGGTCTCCCC ATTCTGAATG TGATGAACAA GGATGCAACA CTAAATGACG TTGCTGGCTT GTTTTGTGGC CTTGATCGAT TTGAGGTGAG GGAGAAACTA TGGGCAGATC TTGAGGAGAC AGGTTTAGCT GTTAAGAAGG AGCCTCATAC TTTACGAGTT CCAAGATCTC AGCGTGGTGG AGAAGTTATT GAGCCACTTG TAAGCAAACA ATGGTTTGTC CACATGGATC CTCTAGCTGA GAAGGCTCTT CTTGCTGTTG AAAACAAAGA ACTTACCATC ATACCTGAGA GATTTGAGAA GGATTGTGAG GAGGACTACA TAGTTGCTAA AAATGCTGAA GAAGCCCTTG AGAAAGCCCA TGAGAAGTTT GGAAAAGATG TTGAAATATA TCAGGATCCA GATGTTCTTG ACACCTGGTT TTCCAGCTCA TTGTGGCCAT TCAGCACTCT TGGCTGGCCT GATGTATCAG CGAAGGATTT CAATAACTTC TACCCTACAA ATATGTTAGA AACAGGAATG GTTATGATGG GAATAGAATT TACAGGGACC GTTCCATTTT CTCATGTCTA CCTTCACGGA CTTATAAGGG ACTCTCAAGG GAGAAAAATG TCAAAATCTC TTGGGAATGT GATTGATCCG CTTGACACAA TCAAAGATTT TGGCACTGAT GCTCTGAGAT TTACGATTGC ACTAGGAACT GCTGGTCAGG ATCTGAACTT ATCTATTGAG AGGTTAACTG CAAATAAAGC ATTCACCAAC AAACTATGGA ATGCTGGAAA GTTTGTGTTG CATAGTCTGC CTAGTCTAAG TGATACATCT GCTTGGGAGA ATTTGCTGGC CCTCAAGTTG GACAAAGAGG AAACCCTGCT TAGTTTACCC TTGCCTGAGT GTTGGGCGGT GTCAAAGCTC CATATTCTCA TTGATTCTGT CACAGCAAGC TATGAGAGGT TGTTCTTTGG GGATGCAGTT TTGTTATATG TCTTTGAGAA TATTCTTAAG CTGTTGCATC CATTTATGCC GTTTGTAACC GAGGATCTAT GGCAGGCACT TCCCCACAGG AAAGAAGCAC TCATTGTGTC TCCATGGCCA CAAAATTCAC TTCCAAGAAA TGTTGAATCA ATAAAAAAAT TTGAGAATTT ACAAGCTCTG ACTAGAGCAA TTCGAAATGC ACGGGCAGAG TATTCAGTGG AGCCGGTAAA GCGTATATCT GCCTCAGTAG TTGGAAGTGC AGAGAAAGAG AAGGAGGTAT TAGCTCTTCT ATCCAGGCTT GACTTAAACA ACGTCCATTT TACCAATGCC CCTCCTGGCG ATGCAAATCT CTCAGTCCAC CTTGTAGCCA GTGAAGGACT AGAGGCATAT CTACCTCTTG CAGCCATGGT TGATATATCT TCTGAAGTCC AACGCATTTC AAAACGTCTC TCCAAGATGC AAACTGAATA TGACGCCCTC GTAACTCGTC TCAGTTCACC AAAGTTTGTG GAGAAAGCTC CAGAAGAAGT GGTGAGAGGT GTAAAGGAGC AAGTAGAAGA ATTAGAAGAG AAGATAAAGC TGACCAAAGC TAGGCTTGGT TTTCTCAAGT CTACTACTTC TTTAGTGTCT CAGTAA |
| Length | 3306 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 6556033.. 6564489 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G16715.1 |
| Description | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases |
| TAIR curator summary | |
| Alias | [EMB2247][embryo defective 2247] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg477758 | zeta-carotene desaturase |
| 1.73205 |
Ahg473366 | cytochrome P450, family 97, subfamily A, polypeptide 3 |
| 16.4317 |
Ahg944415 | Pentatricopeptide repeat (PPR) superfamily protein |
| 18.3303 |
Ahg950808 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase |
| 23.0651 |
Ahg479081 | AAA-type ATPase family protein |
| 25 |
Ahg331859 | |
| 26.4953 |
Ahg927376 | FTSH protease 12 |
| 29.5804 |
Ahg949999 | embryo defective 2737 |
| 32.619 |
Ahg485172 | glycine-tRNA ligases |
| 35.6651 |
Ahg471810 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|