Detail



ID : Ahg329509

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|329509|fgenesh1_pm.C_scaffold_7001736
Sequence
ATGTGTCCCT GCGAAGAGCG TCGTGCTCCA CCTGGGGTTT ACTATACTCC GCCGCCGGCG AGAACAAGTT ATGTGGCGGC GATGCCGTTG TCGGAGAGGA GAAGACCACC GTTTTCTTGT TCGTCGTCGT CGGAGAAACG TGATCCGTTT CACATTGTTC ACAAGGTTCC TTCTGGTGAT TCTCCTTACG TCAGAGCCAA ACATGCGCAG TTGATAGATA AAGATCCGAA TAGAGCTATA TCATTGTTTT GGACTGCAAT AAACGCTGGA GATCGAGTTG ATAGTGCTTT GAAGGACATG GTAGTTGTAA TGAAACAGTT AGACCGATCT GACGAAGGAA TTGAAGCCAT CAGATCCTTT CGGTATCTCT GTTCTTTCGA GTCTCAAGAC TCCATTGATA ACTTGCTACT CGAACTCTAC AAAAAGTCAG GGAGGATTGA AGAAGAAGCT GAGTTACTTG AGCACAAGCT GAAAACACTC GAACAAGGAA TGGGATTTGG AGGTAGAGTC ATTAGAGCTA AAAGGGTTCA AGGAAAACAT GTTACAATGA CTATCGAGCA AGAGAAAGCA AGGGTATTAG GGAACTTGGG CTGGGTTCAT TTACAGTTAC ATAACTATGG AATTGCAGAG CAGCATTACA GGAGAGCTTT GGGTTTGGAG CGAGACAAAA ACAAACTGTG CAACCTTGCA ATCTGCTTGA TGCGTATGGG TCGAATTCCT GAAGCTAAAT CTCTTCTTGA TGATGTAAGA GATTCTTCTA CAGAGAGTGA ATGTGGAGAT GAACCATTCA CAAAGTCTTA TGACCGAGCC GTTGAGATGT TAGCAGACAT AGAATCAAAA AATCCAGAAG CTGATCTTTC GGATAAGTTC TACGCGGGAT GTTCATTTGC AGATGGGATG AAGGAAAACA TAGCTCCTGG AATCGCAAAC AAGAACTACT CGCATGTGTC TTCTTCTCCA GCATCTGTTG GACCGAACTC TGCAGGTCTA TATACACAAC CACGCGGTTG CAGAGCAGGG ATGTATGAGG AAGAGACCAG AGGTGCAGCT CGAAAGCTAC TGTTTGAGAA ACCGAAACCT TTTGGTTCTG AACAGATTAA GATCTTAAAG AGAGGAGAAG AAGAACCCCA GACGCGAAAG AAACTGGACC CGAACATGAT TCAATATCTC CATGAATTCA TCAAAGATAC AGCAGATGGT CCGAAGAATG AATCTAAGAA AAGCTGGGCA GATATCGCAG AAGAGGAAGA AGAAGAAGAA AGATTGCAGG CAGAGACATA G 
Length1281
Protein Sequence
Protein Residue
Map Locationscaffold_7: 8921674.. 8923457
Download Sequence
A.thaliana
AGI-codeAT4G20900.1
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
TAIR curator summaryms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein.
Alias[MS5][TDM1][MALE-STERILE 5]
Gene coexpression
MR
MR Locus Description
25.8457 Ahg472118 DDT domain superfamily
28.3019 Ahg476534 TBP-associated factor 2
51.9615 Ahg926474 COP9-signalosome 5B
59.8331 Ahg492999 Pollen Ole e 1 allergen and extensin family protein
72.3326 Ahg470271
75.0467 Ahg490376
78.7464 Ahg476896
85.7904 Ahg348307 RING/FYVE/PHD-type zinc finger family protein
99.6995 Ahg486937 DNAJ heat shock family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression