Detail



ID : Ahg330485

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|330485|fgenesh1_pm.C_scaffold_7002712
Sequence
ATGCAACGAT GGATTTATCA TCAAACTTGC GGGAAAAAAT CAAAGAAAGT GACGACCAGA AGGAGGAGGA CATTGGCACT ATATCTCTTG CTTTGTATAA CTCTATTCTC CATCACTTTC TTCTTATTTC CTCATAATTC TTTCAACCCC ATTAACAATT ACAATGTTCT CTACGTCGAA CCTCAACTAA ATTTTAAGGA CTGTGACTTG TCTAAAGGAC AATGGATTCG AGACGAAAGA GGGTCGCTGT ACTCAAACTC TACCTGTCCT ACAATACCCG ACTCGAAAAA CTGCTTAAAA CATGGGAGAC CAAACACAGA TTTCTTGTTC TGGAGATGGA AACCCGAAGG ATGTGAACTT CCGAGATTCA ATCCCAAAGC TTTTCTCGAA CTTGTTCGCG GCAAAAAGAT GAATTTCATT GGTGATTCAG TAGCCAGAAA CCACATGGAG TCTCTTCTCT GCCTCTTGTC AATTCATGAC TTCACTCTAT CTACCTCATG GACTAAGTTT CTAGTGGCGG GATTCGAGAG GACTCATGCT AACAAGACCG GAACAGGAAT TTATGATCTC GACATTGACA AGATCGATGA GCAATGGGCG AAGGATCTGC CAAATACAGA CATTGCCATT GTTTCAGCTG GTCATTGGTT ATTCAGACCA ATATACATAC ATAGAGGAGA TGAGACAATT GGTTGCATCT TCTGTAACTT ACCAAACATG ACACAGATTA GCTTGAAAGA AGGGTTTAAG CTGGTTTTCT CAGCTGCTTT TAAGCACATC AATGGATGTC AAAACTGCAA AGACAACTTA GTTACGCTTC TCAGGACGTT TTCGCCTACC CATTTTGAGA ATGGGACTTG GAACACTGGA GGAGCTTGCG GGAGGACGAT CCCCTTTAGG GTAGATGAAA TCAGCCAGCA AAGTAGCGAT ATGGAAATCA GAACATCTCA GATAGAACAG CTTGAAGAGA TTAAAAGTGA CAGCTTAAAG AAGAAGAAGT TTGCGGTTTT GGATGTGACT AGGGCTATGC TAATGAGACC AGATGGGCAC CCGAATTCTT ACTGGGGGAA TAAATGGATG AAGGGTTTCA ATGACTGTAC TCACTGGTGC TTGCCTGGAC CAATCGATGC CTGGAGCGAG TTTCTCATGG CACTACTTAG ACAACTCAGG TAA 
Length1173
Protein Sequence
Protein Residue
Map Locationscaffold_7: 21155488.. 21156984
Download Sequence
A.thaliana
AGI-codeAT3G28150.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 22
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[AXY4L][TBL22][ALTERED XYLOGLUCAN 4-LIKE][TRICHOME BIREFRINGENCE-LIKE 22]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg947386
4 Ahg928121
4.89898 Ahg946870 RING/U-box superfamily protein
5.09902 Ahg932439
6 Ahg359788
6.32456 Ahg924323 Expressed protein
6.9282 Ahg924292
8.30662 Ahg491351 Plant protein of unknown function (DUF827)
8.3666 Ahg936051 nicotinate phosphoribosyltransferase 1
8.3666 Ahg949446
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression