| Annotation |
|---|
| Description | jgi|Araly1|331156|fgenesh1_pm.C_scaffold_8000499 |
| Sequence |
ATGGATTCTG CAGAGGAAGA AGGTGCTAGG GCTGAAGAAG AGATCGGACG CGCTGGTTTG TGTAGGCAGC GGAGAGCTTC TACGAAGATG GGGATTTACG TTGACACTCT GACTGACGAC GACGAATATG AGAGACCCAA GCGAAAAGGC AAAAAGGGGG TATATATGGC TCGGAAAAAG ACTACCAAGG AAGACGAAGA GAAGCAAAAT AACGAAATCG ATCAAAATGT TACGGTTGAA GAAGCGAACG GAGCCACTTC TAAGACGAGG GTTAACACAG ACTCAATTAC TGAGCAATCG AGCAACAAGC GTAGAAAAAC AGTTAACAAA GACAATAAAC ACCGCCAGTC CAATATGTGT CATCAATGTC AACGGAACGA TAGAGGGCAA GTTGTGCGGT GTCAGAATTG CAAGAAAAAG AGATTTCGCC TCCCATGCTT AAGAACTTGG TACCCCAACA TAGCAAAAGA AGATATAGCC AAGAAATGCC CATGCTGCTG TAGCATTTGC TGTTGCAGAA GATGCTTGCG TCTAGATACT AAAATAAAAG GGATAAAGTC GAATCTCGAG GTCAGCAAGG ATGCAAAAAT TAAATTCTCT AAATATACTT TGCGGTGGCT TCTCCCACAT ATGAAGGAAA TAAATGATGA ACAAATTGCT GAGAAGGAAC TTGAGGCAAA GATATCTGGA CTGGAGTTTG AAGAGGTGAA GCCCCAAGAC GCTGAATCTC CCCCCGATGA AAGACTAACT TGTGATATCT GCAAGACTTC GATCTTTGAT CTTCATAGGA GTTGCGAGGA CTGTTCTTGT GATATCTGCC TTACTTGTTG CCTTGAGATC CGCAATGGAA AGCCTCAGGC ATGTAAGGAG GATGTGTCTT GCAATTATAT TAACCGAGGT TTAGAGTATG CACATGGAGG AAAAGGACAA GTTATTGAAA TGCCGAGTGA TGAACCGAAT GATAGCAAAG ACCATATGAA GGACCCATCT ATGTGGAAAG CAAATGAAGC TGGAATCATT ACTTGTTATT GTGGTGCCGA GAATTTAGTG TTGAAACGCC TACTTCCGGA TGGTTGGGTA TCTGATTTGT ATAAGCAAGT AGAAAAATCT GCTGAAGCTG GCAAACTTTT GGATTTGTCT GAAACGGTTT CGGAACGATG CCCTTGTTTT AAGTCTGACG GTCATATCGA CATGGACAAC GGTAAAGTGT TCAAGGCTGC TTGTCGAGAA GGTTCAGAGG ACAATTATAT ATATTGTCCA AGTGTTAGAG ATGTTCAACA AGATGATCTG AAGCATTTTC AACATCATTG GGTCAAAGGT GAGCCTGTGG TTATGAGGAA TGTGCTTGAG GCTACATCTG GTTTAAGCTG GGAACCAATG GTAACATATC GTGCCTGCCG TCTGATACGC AACAAAAAGC ATGAAACACT TCTAGATGTT AATTCTACTG ATTGTCTGGA CTTCTGTGAG GTAGAAATTA CTCTTCATGA ATTTTTCACC GGATACATAG AGGGCAGATA TGATCGAATG GGTTGGCCAC GTGTTCTAAA ATTGAAAGAT TGGCCTCATC TAAGAGTTCT TAACTTCTTA TGCAGTTTGC CTTTGAAGCA GTACACTCAC CCAACTAATG GACCTTTGAA TCTGGCTGTC AAACTGCCTA AAAATTGCTC GAAGCCAGAC ATGGGGCCAA AGACTTACAT TGCTTATGGA TTTGCGCAAG AATTTGGCCG CGGAGATTCT GTAACTAAGC TCCATTGCGA CATGTCTGAT GCGGTAAATG TTTTGACGCA CATATCTGAA GTGCCCATTA GAAGGGAAAA GCAACCTGAT ATTGAAAAAC TGAAAAAGAA GCATGCTGAA CAAGATCTCA AGGAGCTCTA TTTCTCAGTA GCTAACAAGG AGGAAATGAT GGGGATTCTT GAAAAGTCTA GCCAAGAAGT CGAAAATGTT GAGACCGATG ATGGAGCTCT TTGGGACATT TTCCGTAGAG AAGACATTCC AAAATTAGAA CATTACCTTC AGAAACATTA CAAGGAGTTT AGACATTTCT ACTGTTGCCC TTTGTCCCAG ATTGCTCATC CAATACATGA CCAAACGTTC TATTTGACAC GGTATCATAT AGCGAAGCTG AAAGAAGAAT ATGGCATTGA ACCATGGACC TTTAATCAGA AGCTTGGGGA TGCTGTCTTA ATACCTGTAG GGTGCCCACA TCAAGTCAGA AATTTGAAGT CTTGCACAAA GGTAGCGCTT GACTTTGTCT CACCTGAAAA TGTCAGCGAG TGTTTACGCT TGACAAAACA ATATCGTCTA CTTCCACCAA ATCATTTTGC TAAAGAAGAC AAGTTAGGGG TAAAGAAGAT GATAATTTAT GCAGTTGATA GGGCTCTCAA AGACTTAAGT GGAAAGGAGT CTACAGAACC CGAAGAGACG AAAAATTTAA AGAAAGGGAA GAAGTCAAAG GTGATAGTGA AGGCCGTCGA TAAGGCTCTC AAAGACTTAC CTCCAAGTGA AAAGTCTTCG GAAACCGTAG AGGAGAAATC AAACGGGATA GTCAATCCAA TCGATAAGGC TCTCCAAGAC TTACCCCCAA CTGAAAAGAA GTGTTACCCC CAACTGAAAA GAAGTGAGCT TTTACTTATC TTCTCACTAC CTACAAAAAG CATTAGTAAT CTGAGTTTCT TTTCGTCTCC GGAAGGGGAA GGGGAGAAAA AAACAGAGAT AGTGAAGACA TACGAGCGTA GAAAAAAGCA ATGA |
| Length | 2754 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 6021317.. 6026926 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G07610.3 |
| Description | Transcription factor jumonji (jmjC) domain-containing protein |
| TAIR curator summary | IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase. |
| Alias | [IBM1][increase in bonsai methylation 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 48.0833 |
Ahg922541 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein |
| 64.8845 |
Ahg933779 | Domain of unknown function (DUF313) |
| 76.3872 |
Ahg891476 | RNI-like superfamily protein |
| 76.433 |
Ahg945082 | Galactose oxidase/kelch repeat superfamily protein |
| 79.5801 |
Ahg931239 | AAA-type ATPase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|