Detail



ID : Ahg338690

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|338690|fgenesh1_pg.C_scaffold_2000789
Sequence
ATGGGTTTGT CTTGGTATCG TGTTCATACT GTTGTATTGA ATGATCCCGG TCGTTTACTT TCTGTTCATA TAATGCATAC TGCTCTGGTT GCTGGTTGGG CTGGTTCGAT GGCTCTATAT GAATTAGCAG TTTTTGATCC CTCCGACCCC GTTCTTGATC CAATGTGGAG ACAAGGTATG TTCGTTATAC CTTTCATGAC TCGTTTAGGA ATAACCAATT CGTGGGGCGG TTGGAATATT ACAGGAGGGA CTATAACGAA TCCGGGTCTT TCGAGTTACG AAGGGGTAGC CGGAGCACAT ATCGTGTTTT CTGGTTTGTG CTTCTTGGCA GCTATTTGGC ATTGGGTATA TTGGGATCTA GAAATTTTTT GTGATGAACG TACAGGAAAA TCTTCTTTGG ATTTGCCCAA GATTTTTGGA ATTCATTTAT TTCTTTCAGG AGTGGCTTGC TTCGGTTTTG GCGCATTTCA TGTAATAGGA TTATATGGTC CTGGAATATG GGTATCCGAC CCTTATGGAC TAACCGGAAA GGTCCAACCC GTAAACCCGG CGTGGGGCGT GGAGGGTTTT GACCCTTTTG TTCCGGGAGG AATAGCCTCT CATCATATTG CAGCAGGGAC GTTGGGTATA TTAGCGGGCC TATTCCATCT TAGTGTTCGT CCGCCTCAAC GTCTATACAA AGGATTACGT ATGGGCAATA TTGAAACCGT TCTTTCCAGT AGTATTGCTG CTGTCTTTTT TGCAGCTTTT GTTGTTGCTG GAACTATGTG GTATGGTTCT GCAACTACTC CTATCGAATT ATTTGGTCCT ACTCGTTATC AATGGGATCA GGGATACTTT CAACAAGAAA TATATCGAAG AGTTAGTGCT GGACTGGCTG AAAATCAAAG TTTATCAGAA GCTTGGGCTA AAATTCCTGA AAAATTAGCT TTTTATGATT ATATTGGTAA TAATCCAGCA AAAGGGGGGT TATTCCGAGC AGGTTCAATG GACAATGGGG ATGGAATAGC TGTTGGATGG TTGGGCCACC CCGTCTTTAG GAATAAAGAA GGGCGTGAAC TTTTTGTACG CCGTATGCCT ACTCTTTTTG AAACTTTTCC GGTTGTTTTG GTAGACGGAG ACGGAATTGT TAGAGCCGAC GTCCCATTTA GAAGGGCAGA ATCAAAATAT AGTGTCGAAC AAGTAGGTGT AACTGTTGAG TTTTATGGTG GTGAACTCAA TGGAGTGAGT TATAGTGATC CCGCAACTGT GAAAAAATAT GCTAGACGGG CTCAATTGGG TGAGATTTTT GAATTAGATC GTGCGACTTT GAAATCCGAT GGTGTTTTTC ATAGCAGCCC AAGAGGTTGG TTTACGTTTG GACATGCTTC GTTTGCTCTA CTTTTCTTCT TTGGACACAT TTGGCATGGT GCTAGAACCC TCTTCAGAGA TGTTTTTGCT GGTATTGATC CAGATTTGGA TGCTCAAGTG GAATTTGGGG CATTCCAAAA ACTTGGAGAT CCAACTACAA AACGACAAGC AGTCTGA 
Length1527
Protein Sequence
Protein Residue
Map Locationscaffold_2: 8587577.. 8589103
Download Sequence
A.thaliana
AGI-codeATCG00680.1
Descriptionphotosystem II reaction center protein B
TAIR curator summaryencodes for CP47, subunit of the photosystem II reaction center.
Alias[PSBB][photosystem II reaction center protein B]
Gene coexpression
MR
MR Locus Description
6 Virus2953
7.34847 Virus0706
13.5647 Virus3303
13.8564 Ahg888927 MIR156C; miRNA
15.8114 Virus0456
21.5639 Virus3371
23.6854 Ahg475602 ribulose-bisphosphate carboxylases
28.6182 Ahg928754
29.0689 Ahg934730
29.0689 Ahg946550
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression