Detail



ID : Ahg342163

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|342163|fgenesh1_pg.C_scaffold_3001926
Sequence
ATGTCTAGTC TTGGTCACTT TCAGATCCTT GTTTTTCTTC ATGCTTTGCT TATATTCTCA GCTGAATCTC GCAAAACCCA TTTGGTGAAC GATAATGATG TTGAATCTAG CGACAAGAGT GCAAAAGGCA CGCGATGGGC TGTTTTAGTT GCTGGATCAA ATGATTATTC TAACTACAGG CATCAGGCTG ATATATGCCA TGCGTATCAG ATACTCCGAA AAGGCGGTCT AAAAGATGAA AACATCATTG TCTTTATGTA TGATGATATC GCGTTTTCCT CGGAGAATCC TAGGCCTGGA GTTATCATCA ATAAACCAGA TGGAGAAGAT GTTTATAAAG GAGTTCCTAA GGACTACACT GAAGAAACTG TTAATGTTGA AAACTTCTAT AATGTGCTAC TTGGAAATGA AAGTGGTGTC ACAGGAGGAA GTGGCAAAGT TGTGAAAAGT GGTCCTAATG ATAACATCTT CATCTACTAT GCTGATCATG GAGCTCCTGG CTTACTAGCG ATGCCCACTG GTGATGAGGT CCTTGCAAAA GATTTTAATA AAGTCTTGGA GAAGATGCAT AAGCGAAAAA GCTACAACAA GATGGTGATC TATGTTGAAG CATGTGAATC TGGAAGTATG TTTGAAGGGA TTTTAAAGAA AAATCTCAAT ATATACGCAG TGACTGCTGC TAATTCGAAA GAGAACAGCT TTGGAACTTA CTGCCCTGAG TCGTATACTC CTTCTGCTCC TGAGTTTGAA ACTTGTCTCG GCGATGTATT TAGCATCTCT TGGCTTGAGG ACAGTGACCT TCATGACATG AGCAAGGAGA CTTTGAAGCA GCAATATCAC GTTGTAAAGA GAAGAGTAGG ATCTGATGTA GAACAGACTT CTCATGTATG CCGTTTCGGG ACCAAGGAGA TGCTTAATGA TTATCTTGCC TCTTACATTG GAAGAAATCC TGAAAACGAA AACTTCACTT TCACTGAATC CATTTCCTCA CCAATCTCTA ATTCTGGCTT GGTCAATCCG CGCGATATCC CTCTGTTATA TCTCCAGAGA AAGATTCAAA AAGCTCCAGT GGGATCACCT GAAAGCAAAG AAGCTCAGAA GAAATTGTTT GACGAAATGA ATCATAGGAA ACAAATCGAT CAGAGCATTA CAGAGATTCT GCGACTTTCG GTTAAACAAA CCAATGTCTT AAATCTCCTA ACTTCCACAA GAACAACAGG ACAGCCTCTA GTAGACGATT GGGATTGTTT CAAGACTCTG GTTAATAGCT TCAAGAATCA CTGCGGTGCA ACAGTGAATT ACGGATTGAA GTATACAGGA GCGCTTGCCA ATATCTGCAA TATGGGAGTG GATGTGAAGC AAACTGTTTC AGCCATTGAA CAAGCTTGTT CAGTTAAATG A 
Length1401
Protein Sequence
Protein Residue
Map Locationscaffold_3: 8321683.. 8323712
Download Sequence
A.thaliana
AGI-codeAT3G20210.1
Descriptiondelta vacuolar processing enzyme
TAIR curator summaryEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.
Alias[DELTA-VPE][DELTAVPE][delta vacuolar processing enzyme][DELTA VACUOLAR PROCESSING ENZYME]
Gene coexpression
MR
MR Locus Description
2.44949 Ahg474841 SWI-SNF-related chromatin binding protein
5.91608 Ahg924509
11.225 Ahg924379
11.6619 Ahg330886 zinc transporter 8 precursor
14 Ahg937040
14.8324 Ahg899675 methyl esterase 19
14.8324 Ahg888832 SCR-like 25
15.4919 Ahg492604 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
15.748 Ahg893193
17.0294 Virus1148
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression