Detail



ID : Ahg342933

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|342933|fgenesh1_pg.C_scaffold_3002696
Sequence
ATGGCAACTC TTGAAGATTC TTTCTACGCA GACCTTGACG AGTTATCTGA CAATGAAGCA GAACTGGATG CTAGAACAGA GGAGGAGGAT GACAATATTG ACATGGACAT GGAAGACTTA GAAACCCTAA ACTATGATGA TCTCTCGAGA GTTTCTAAGC TACAGGAAAC TCATAGATAC GCTGATATAC TGCATAAAGT GGAACATGCT CTCGGAAAGG ATTCGGATGG AGGAGCAGAG ATGGGAACTG TATTGGAAAA CAAGCTTATC GTTGATTGCA ATCAGCTCTC AGCTGATATC GAGAATGAGA TTGTGGTCTT CCACAACTTT ATCCGCGACA AGTACAGACT TAAGTTCCCA GAGCTTGAGT CGCTGGCCTT CTTCAACCAG CTACTGTTAT TGCTTACTGC TTTAACCACA AAAGGGAAAC CACTTCCAGA TAGTATCCTA CGAAAGACGT TAGACGCTTG TGATCACGCT ATTGATCTTG ATTCGGCAAG GAAAAAGGTT CTTGAGTTTG TTGAAAGAAA GATGGGATCT ATCGCACCAA ATCTCTCTGC TATTGTCGGG AGTGCTGTTG CAGCCAAGCT TTTGGGAACT GCTGGAGGTT TATCGGCACT TGCGAACATG CCTGCTTGTA ATCTTCTAGT TCTTGGCCAC AACAGGAAGA ACCATGTCGG ATTCTCTACT GCAATGTCAC AGTCTCGTGC GGGTTATTTG GAGCAGACAG AGATTTTCCA AAGCACGCCT CCGGAACTTC AAATGCGCGC TAGCAGACTC TTGGCTTCAA AATCGACTTT GGCAGCAAGA GTTGACGCTA CTAGAGGAGA TCCATCTGGA ACAAACGGGA AAGCTTTGAG GGAGGAAATC CGCAAGAATA TTGACAAGTG GCAAGAACCT CCACCTGCAA GGCAACGTAA GCCACTTCAT GTTCCTTATT CTGAGCCTAA AAAGAGAAGG GGTGGTCGCC GTCTAAGAAA AATGAAAGAA AGGTATCAAG TGACAGACAT AAGAAAGCTG GCCAACAGGA TGGCGTTTGG TACACCTGAA GAGAGCTCCC TAGGTGATGG ATTAGGTATC GGATATGGAA TGCTTGGTCA GGCTGGGAGC AATAGGCTGC GTGTTTCGAG CAAGCTGAAA GTTAATGCTA AGGTCGCCAA AAAGCGACAG TTCACAGGTG GTTCTACTAC CTCTGGTTTG ACGACATCAA GTCTGGCTTT TACTCTTGTG CAAGGAATAG AGTTGTGCAA TCCTCAGGCA TTAGGATTAG TCAGTTGGAT TCAAAGCACT TACTTCTCAG AGTCGGGAAC TTTCTCCAAA CTCAAGAAGA TTTAA 
Length1335
Protein Sequence
Protein Residue
Map Locationscaffold_3: 13948756.. 13950174
Download Sequence
A.thaliana
AGI-codeAT1G60170.1
Descriptionpre-mRNA processing ribonucleoprotein binding region-containing protein
TAIR curator summary
Alias[emb1220][embryo defective 1220]
Gene coexpression
MR
MR Locus Description
2.82843 Ahg491811 Phospholipase A2 family protein
5.74456 Ahg494085 brassinosteroid-6-oxidase 1
12.7279 Ahg949400 F-box and associated interaction domains-containing protein
16.6132 Ahg926896 Protein of unknown function (DUF620)
18.8149 Ahg489252
30.9839 Ahg944327 zinc finger (C2H2 type) family protein
34.8138 Ahg478391 Cytochrome P450 superfamily protein
35.7071 Ahg486738 WRKY family transcription factor
36.9865 Ahg917747 ferric reductase-like transmembrane component family protein
38.0526 Ahg947825
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression