Detail



ID : Ahg343130

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|343130|fgenesh1_pg.C_scaffold_3002893
Sequence
ATGGACGGTA CCACTTACCA AAGATTCCCA AAGATCAATA TCCGTGAGCT TAAAGATGAC TACGCCAAGT TCGAGCTTCG CGAAACCGAC GTTTCAATGG CCAACGCTCT CCGTCGCGTA ATGATCTCCG AAGTCCCCAC CATCGCAATA GATCTCGTCA ACATCGAGGT TAATTCCTCT GTTCTCAACG ACGAGTTCAT TGCTCAACGA CTTGGTCTCA TCCCTCTCAC TAGCGAGCGT GCTATGAGCA TGCGGTTCTG TCAAGATTGT GATGCTTGTG ATGGAGAAGG ACAATGCGAG TTTTGCTCTG TTGAGTTTCG GCTTAGTGCT AAGTGTGTTA CTGACCAAAC CCTAGATGTT ACTAGTAGAG ATCTCTACAG TGCTGATCCT ACTGTTACTC CTGTTGATTT CACTATTGAC TCGTCTGCTT CTGATTCAAG CGAGCAAAAG GGAATTACCA TTGTGAAACT GCGCAGGGGA CAAGAGTTGA AGCTTAAGGC GATAGCGAGG AAAGGAATTG GGAAAGATCA TGCAAAATGG TCTCCTGCAG CTACTGTTAC GTTTATGTAT GAGCCTGACA TTATTATCAA TGAAGACTTG ATGGACACTT TGACAGACGA GGAGAAAATA GACTTGATTG AGAGCAGTCC AACCAAAGTT TTTGGCATTG ATCCAGTCAC CAGACAGGTT GTGGTCGTTG ATCCTGAAGC ATACACTTAC GATGAAGAAG TGATCAAGAA AGCAGAAGCC ATGGGAAAAC CAGGACTCAT TGAGATCTAT CCGAAAGATG ATAGTTTTGT ATTCACTGTT GAGTCCACAG GTGCACTGAA GGCTTCCCAG CTGGTACTAA ATGCCATAGA CATCCTGAAG CAGAAGCTTG ATGCAATCTG TCTCTCAGAT GACACTGTAG AAGCTGATGA TCAGTTTGGT GAACTCAGTG CCCATATGCG TGGAGGATGA 
Length960
Protein Sequence
Protein Residue
Map Locationscaffold_3: 18830431.. 18835833
Download Sequence
A.thaliana
AGI-codeAT2G15400.1
DescriptionDNA-directed RNA polymerase family protein
TAIR curator summaryNon-catalytic subunit of Nuclear DNA-dependent RNA polymerase V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, At2g15430 can substitute for At2g15400 in the context of Pol V and encodes the equivalent subunit of Pol II and Pol IV.
Alias[NRPE3B][RBP36B]
Gene coexpression
MR
MR Locus Description
41.9881 Ahg901222 homeobox-3
54.8088 Ahg470978 plant glycogenin-like starch initiation protein 5
72.7874 Ahg495065 ethylene response factor 110
77.2269 Ahg916260
79.2591 Ahg938140
80.5605 Ahg900118
88.0454 Ahg892041 cation/H+ exchanger 26
95.0789 Ahg318745 Major facilitator superfamily protein
98.8534 Ahg493233
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression