Detail


ID : Ahg343887

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|343887|fgenesh1_pg.C_scaffold_4000229
Sequence
ATGGAATCTG CTGCTCTTCT ACATTCTTCT CTAACTAGAT TCTCTTGTCG TCAAAACTCC ACTCTCCGTC TCTCTCGACT CAACTCTACC ACTCTCCCCA GAGATGTTCT AATTCGCACC ACTAACTCCA ATACTCTTCC CCGAAGATCA CTTCGTCTTT TTGCCAAAGC TGCGTGCGAA AACCATCATC ACTATCACCA TGAGCACGAT CATCATCATC ACCAAAACCA TCACCAACAT TGCTGTTCCG TAGAACTCAC GGTATCTAAT CATCTTCAGA AGTTGTTGCT CAAGTTCGCT AAAGCTATTG GATGGATTCG CTTAGCCAAT TTCCTCAGAG AAAATCTCCA TCTTTGTTGC TCATCCGTCG TACTCTTCCT CGCCGCAGCG GCCTGTCCTC ACTTGATGAT TCCTAAACCT TACATTACAC CAATTCAAAA CTCCTTCATG ATTGTTGCTT TCCCTCTTGT TGGAATTTCA GCATCTCTTG ACGCACTTAT GGATATAGCT GGAGGAAAAG TGAACATCCA TGTTTTAATG GCATTAGCTG CTTTTGCTTC TGTGTTTATG GGAAATGCTT TGGAAGGAGG ATTACTTCTA GCCATGTTCA ATCTTGCTCA TATTGCTGAG GAGTTCTTCA CTAGTAGGTC CATGTTGGAT GTTAAAGAGT TGAACGAGAG TAATCCAGAT TCTGCATTGG TGATTGATGT GAATGATGAA AATGTACCAA ACTTCTTCGA TTTGACATAC AAAAGCGTAC ATGTGAAGAA TGTAGAAGTT GGATCCTATA TTTTGGTAGG AACTGGTGAG ATTGTGCCTG TGGATTGCCA AGTCTATCAA GGTAATGCAA CCATAACAAT TGAGCATTTG ACTGGGGAAG TGAAGCCATT GGAAGCAAAA GCTGGAGATA GAGTTCCTGG TGGTGCAAGA ACTTTGAATG GCAGAATTAT TGTGAAGAAC TCTCAAGGTG ATGGTTCTTC AATGGACTAT AAACAGGCTA CAAAGGCGTG GAATGAGTCG ACACTTAACA AGATTCTACA ATTGACTGAG GAAGCACACT CTAATAAACC CAAACTTGAG AGATGGCTTT ATGAGTTTGG TGAGATTTAT AGCAAGGTGG TGGTTGTTTT GTCAGTTGCT ATTGCCTTCC TTGGTCCGTT CTTGTTCAAG TTGCCGGTTC TCGGAACCAC AGCATGTAGA GGATCAGTTT ACAGAGCATT GGGATTTCTG GTGGCGGCGT CACCGTGTGC CTTGGCAGTT GCTCCATTGG CTTATGCTAC TGCAATAAGT TCTTGTGCAA GAAAGGGAAT ATTGCTGAAA GGTGGGCAAG TACTGGATGC TCTAGCTTCT TGTCATACTA TTGGTTTTGA TAAAACCGGG ACCTTAACAA CCGGAGGCCT TACATGCAAA GCAATTGAAC CCATTTATGG GCATCATCAA GAAGGAAATA ATGAAAGTGT AAATCCTTGT TGTATGCCAA ATTGTGAAAA TGAAGCATTA GCTGTAGCAG CTGCTATGGA GAAAGGTACC ACACATCCTA TTGGAAGAGC CATGGTTGAC CACAGTGTTG GGAAGGACCT CCCTTCTGTT TCTGTTGAAA GCTTTGAGTA TTTTCCAGGT AGAGGCCTTT CTGCTACTGT TAACTGTATT GAGTCAGTAA CCGAAGGTAG GAAACTGCGG AAAGCGTCAC TTGGTTCAGT AGAATTCATT ACTTCGCTCT TCGAATCACA AGATGAGTCT AGAAAGATCA AGAATGCTGT AAATTCTTCA TTGTACGGAA ATGACTTTGT TCATGCTGTT CTTTCACTTG ATCAAAAGGT AACATTGATT CACCTCGAGG ATCAGCCTCG TCGAGAGGTA TCAAAAGTTC TAACAGAACT TAAGAGCTGG GGTAAAATGA GAATAATGAT GTTAACTGGA GACCATGAGT CAAGTGCTTG GAGAGTTGCA AATGCTGTGG GTATTGATGA AGTCTACTGC AACCTAAAAC CAGAAGACAA ACTTGATCAT GTCAAAAACA TCTCAGAAGG TTCAGGTGGA GGAGGTTTAA TCATGGTGGG AGAAGGCATT AACGATGGTC CAGCTTTAGC AGCTGCAACC GTAGGAATTG TTCTTGCTCA ACGTGCAAGT GCCTCGGCTA TAGCCGTTGC TGATGTCTTA CTTCTTCAAG ACAACATCAC TGGTGTTCCT TTCTGTATCG CCAAATCCCG CCAAACAACA TCACTGGTCA AGCAAAACGT GGCTATTGCG TTAACCTCGA TATTCTTAGC CGCTCTTCCA TCAGTTCTCG GATTTCTTCC CTTGTGGTTG ACGGTACTAT TACATGAAGG CGGAACACTT CTCGTTTGCC TTAACTCGAT TCGCAGTTTA AACGATCCAT CCTGGTCATG GAAACAGGAC ATTGTTCATG AACTTCACCT CAGCAAAACC CATCAGCAAC ATAAAACGTA TAGAGATGGG AATTGA
Length2466
Protein Sequence
Protein Residue
Map Locationscaffold_4: 1599554.. 1602814
Download Sequence
A.thaliana
AGI-codeAT4G37270.1
Descriptionheavy metal atpase 1
TAIR curator summaryEncodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions.
Alias[ATHMA1][HMA1][ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1][heavy metal atpase 1]
Gene coexpression
MR
MR Locus Description
2.64575 Ahg924078 prenylated RAB acceptor 1.G1
5.19615 Ahg493759 RHD SIX-LIKE 1
6.32456 Ahg328182 zinc finger (C2H2 type) family protein
6.63325 Ahg943179
7.74597 Ahg475383 GDSL-like Lipase/Acylhydrolase superfamily protein
9.8995 Ahg924379
12.2474 Ahg947570 F-box associated ubiquitination effector family protein
16.4317 Ahg898770
19.5959 Ahg343951 early nodulin-like protein 11
21.9773 Ahg934699 F-box family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression