| Annotation |
|---|
| Description | jgi|Araly1|344116|fgenesh1_pg.C_scaffold_4000458 |
| Sequence |
ATGAGTAGTT TGGTGGAGCG GCTTCGTATA CGATCAGATA GGAAACCGGT TTATAATCTA GATGATTCTG ATGATGACGA CTTCGTTCCT AAAAAAGATC GGACCTTGGA GCAAGTCGAG GCTATTGTCA GAACTGATGC GAAAGAAAAT GCATGCCAGG CTTGTGGAGA AAGTGCAAAT CTTGTAAGCT GCAATACATG TACGTATGCG TTCCATGCTA AATGCTTAGT TCCGCCTCTT AAAGACGCGT CAGTGGAAAA TTGGAGATGC CCTGAATGCG TTAGTCCTCT TAATGAGATA GATAAGATAT TGGACTGTGA AATGCGTCCT ACAAAATCTA GTGAACAAGG TTCCTCCGAT GCGGCACCAA AGCCAATTTT TGTGAAACAG TATCTCGTGA AGTGGAAGGG ATTATCATAC CTTCACTGCT CTTGGGTGCC TGAGAAGGAG TTCCAGAAGG CTTATAAGTC AAATCATCGT TTAAAAACCA GGGTGAACAA TTTTCACCGT CAAATGGAAT CTGTCAATAA CAGCGAAGAT GATTTTGTTG CCATTCGTCC TGAGTGGACC ACTGTTGATC GGATTCTTGC CTGCAGAGAG GAAGATGGTG AGCTGGAATA TCTTGTGAAA TATAAAGAGC TATCTTATGA TGAATGTTAT TGGGAGTCAG AATCAGACAT CTCAACCTTC CAGAATGAAA TTCAAAGGTT CAAGGATGTA AATTCTAGAA CTCGCAGGGG TAAAGATGTT GACCATAAAA GAAATCCCAG AGACTTTCAA CAGTTTGATC ATACTCCTGA ATTCCTCAAA GGCTTGTTGC ATCCATACCA GCTTGAGGGA CTTAATTTTT TGCGGTTCTC GTGGTCAAAA CAGACGCATG TAATCCTTGC TGATGAAATG GGACTAGGCA AAACAATTCA AAGCATTGCC CTTTTAGCTT CACTTTTTGA GGAGAACCTC ATTCCGCATT TGGTAATTGC TCCTCTATCG ACTCTGCGTA ACTGGGAGAG AGAGTTTGCC ACATGGGCCC CACAGATGAA TGTGGTTATG TATTTTGGCA CTTCGCAAGC TCGAGCAGTT ATCAGAGAAC ATGAGTTTTA CTTTTCGAAA GATAAAAAAA AAATCAAGAA AAAGAAATCT GGACAAATCA GTAGCGAAAG CAAGCAAAAA AGAATCAAGT TTGACGTCCT CCTCACATCG TATGAGATGA TCAACCTAGA TACAGCAGTT CTGAAACCAA TTAAGTGGGA GTGCATGATT GTTGATGAAG GTCATCGACT GAAAAATAAG GATTCAAAGC TGTTCTCTTC ATTGACACAG TATTTAAGTA ATCATCGTAT TCTTCTGACA GGAACACCAC TTCAGAACAA CTTGGATGAA CTTTTCATGC TAATGCATTT TCTTGATGCG GGGAAGTTTG GAAGTTTGGA GGAGTTCCAG GAGGAGTTCA AAGATATTAA TCAAGAGGAA CAGATCTCAA GATTGCACAA AATGTTGGCT CCACATTTGC TCAGAAGGGT AAAAAAAGAC GTAATGAAAG ACATGCCCCC CAAAAAGGAA CTCATTTTGC GTGTTGATCT GAGCAGCCTG CAGAAAGAAT ATTACAAAGC TATTTTTACC CGTAATTATC AAGTATTGAC TAAAAAGGGA GGTGCTCAAA TTTCCCTTAA TAACATTATG ATGGAATTAC GAAAAGTATG CTGCCATCCT TATATGCTGG AGGGTGTTGA GCCAGCTATT CACGACGCTA ATGAAGCTTT CAAACAACTT TTGGAATCTT GTGGAAAGCT GCAACTTCTA GATAAAATGA TGGTCAAACT GAAAGAGCAA GGACACAGAG TCCTAATATA CACACAGTTT CAGCACATGC TGGACTTACT TGAAGACTAC TGTTCCTATA AGTTTCAGCA CATGCTGGAT CTACTTGAAG ACTACTGTTC TTATAAGAAA TGGAACTACG AGCGAATTGA TGGAAAGGTT GGCGGAGCTG AGCGGCAAAT ACGCATAGAT CGGTTCAATG CCAAAAACTC TAACAAATTT TGTTTTTTGC TCTCCACAAG AGCTGGTGGC TTAGGAATAA ATCTTGCAAC GGCTGATACA GTAATAATTT ATGACAGTGA CTGGAATCCT CATGCTGATC TTCAGGCAAT GGCTAGAGCT CATCGACTTG GCCAAACAAA TAAGGTGATG ATTTACCGAC TCATAAACCG AGGCACCATT GAAGAAAGGA TGATGCAATT AACTAAAAAG AAAATGGTTC TAGAGCATCT TGTCGTCGGG AAACTAAAAA CACAAAACAT TAATCAGGAA GAGTTAGATG ACATCATCAG GTATGGATCA AAGGAGCTTT TTGCTAGTGA AGATGACGAA GCAGGAAAGT CTGGAAAAAT TCATTATGAT GATGCGGCTA TAGACAAATT GCTTGATCGT GATCTCGTGG AGGCTGAGGA GGTCTCAGTG GATGATGAAG AGGAGAATGG ATTCTTAAAG GCTTTCAAGG TGGCAAATTT TGAGTATATT GATGAAAACG AGGCAGCAGC ATTAGAGGCA CAGAGAGTCG CTGCTGAAAG CAAATCTTCA GCAGGCAGTT CTGATAGAGC AAGTTATTGG GAAGAGTTGT TAAAAGATAA ATTTGAGCTG CACCAGGCTG AGGAGCTTAA TGCTCTTGGA AAAAGGAAGA GAAGTCGCAA GCAGTTGGTA TCCATTAAAG AAGATGATCT TGCTGGTTTG GAAGATGTGA GCTCTGATGG AGATGAAAGT TATGAAGCCG AGTCAACAGA TGCTGAAACA GCGGGACAAG AAGTTCAGAC GGGTCGACGG CCATATAGAA GAAAGGGTCG CGATAACTCG GAGCCAATTC CTTTGATGGA AGGCGAGGGG AGATCTTTCA GAGTACTGGG TTTCAACCAG AGTCAAAGGG CCATTTTTGT ACAGACGTTG ATGAGGTATG GAGCTGGTAA TTTCGATTGG AAGGAGTTTG TTCCTCGCTT AAAGCAGAAG ACCTATGACG AAATAAATGA ATATGGAATA CTCTTCTTGA AGCACATTGC TGAAGATATT GACGAGAACT CTCCAACATT TTCAGATGGT GTGCCAAAGG AAGGACTTAG AATAGAAGAT GTTCTAGTCA GAATTGCTCT TCTGATACTA GTACAGGAGA AGACGAAATT TGTAGAAGAT CATCCAGCGA AACCTGTTTT CACGTCCCGC ATTCTTGAAA GATTCCCCGG ATTGAGAAGT GGAAAAGTTT GGAAGGAGGA ACATGACAAG ATAATGATAC GTGCTGTTTT AAAGCATGGG TATGGGCGAT GGCAAGCTAT TGTTGATGAC AAAGAGTTAG GGATCCAAGA GCTTATCTGC AAGGAATTGA ACTTCCCTCA CATAAGTTTG TCTGCTGCTG AACAAGCTGG CTTGCAGGGG CAGAATGGTA GTGGGGGCTC CAATTTGGGA GCACAGACTA ACCAGAATTC TGGAAGTGGT ATTACTGGGA ACAATAATGC TTCTGGTGAT GGGGTCCAAG TAAACTCGAT GTTCTACTAT CGGGACATGC AGAGACGACT TGTTGAGTTT GTGAAAAAGC GAGTTCTGCT TTTGGAGAAA GCGTTGAATT ATGAATATGC AGAGGATTAT TATGGACTTG GTGGCTCGTC ATCTATCCCT ACTGAAGAAC CAGAAGCTGA ACCAAAGATC GCTGACACAG TGGGAGTGAG CTTTATTGAG GTCGATGATG AAATGCTTGA TGGACTTCCT AAGACTGATC CCATCACTTC AGAAGAAATT ATGGTGGCTG CTGTTGACAA CAACCAAGCG CGGGTCGAAA TAGCTCAGCA TTATAACCAG ATGTGCAAAG TTTTTAATGA GAACGCTCGT GAATCACTCC AAGCATATGT AAACAACCAA CCACCAAGTA CCAAGGTGAA TGAGAGCTTC CGTGCACTCG AATCTATCAA TGGTAACATT AGAACGATCC TTTCGACTCC ACTTGACCAA TCAAAGTCAC ATGAAAACGA CACCAAGCCA AACCTAAACA ATGTTGACAT GAAGGACACG GCCGAAGAAA CAAAACCGTT AAGAGGTGGC GTCGTCGATC TGAATGTGAT GGAGGGAGAG GAGAACATTT CTGAAGCTAG TGGAAGTGTT GATGTGAAAA TGGAAGAAGC CAAAGAAGAA GAGAAGCCAA AGAACATGGT CGTGGATTGA |
| Length | 4200 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 3543158.. 3552803 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G25170.1 |
| Description | chromatin remodeling factor CHD3 (PICKLE) |
| TAIR curator summary | Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. |
| Alias | [CHD3][CHR6][CKH2][EPP1][GYM][PKL][SSL2][CYTOKININ-HYPERSENSITIVE 2][ENHANCED PHOTOMORPHOGENIC 1][GYMNOS][PICKLE][SUPPRESSOR OF SLR 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg922520 | staurosporin and temperature sensitive 3-like b |
| 5.65685 |
Ahg943964 | SAP domain-containing protein |
| 5.65685 |
Ahg478454 | Clathrin, heavy chain |
| 12.9615 |
Ahg486482 | multidrug resistance-associated protein 9 |
| 14.6629 |
Ahg924045 | calpain-type cysteine protease family |
| 17.2337 |
Ahg495758 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein |
| 17.8885 |
Ahg485401 | CDPK-related kinase |
| 18.5742 |
Ahg933191 | |
| 19.5959 |
Ahg485149 | |
| 28.8791 |
Ahg496800 | indole-3-acetic acid inducible 9 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|