Detail


ID : Ahg347894

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|347894|fgenesh1_pg.C_scaffold_5001286
Sequence
ATGAGCAACC TCCACCTCTA CACCTCCGCA CGCTTCCGCA ATTTCCCGAC GGCATTCTCT CTCCGTCACC ACCACAACGA CCCCAACAAC CAACGCCGCC GATCCATCTT CTCCGAGCTC CGTGACAAAA CCCTCGACCC TGGCGGTGAC CTAATTACGA GATGGAACCA CATTTTCCTC ATCACCTGCC TCCTCGCTCT CTTCCTCGAT CCTCTCTACT TCTATCTTCC CATTGTCCAA GCAGGAACCG CATGCATGTC CATCGACGTC CGTTTCGGCA TTTTCGTCAC ATTCTTCCGA AACCTAGCCG ATCTCTCCTT CCTCATCCAC ATTCTCCTCA AATTCAAAAC CGCTTTTGTC TCCAAATCCT CTAGAGTCTT TGGTCGTGGA GAGCTTGTCA TGGACCGCCG TGAAATCGCT ATCCGTTATC TCAAATCTGA GTTTGTAATC GACCTAGCCG CCACCCTTCC TCTTCCTCAG ATAATGATTT GGTTTGTGAT ACCAAATGCT GGAGAATTCA GATACGCAGC TCACCAGAAC CACACACTTT CCTTGATCGT CCTTATACAA TATGTGCCTC GCTTCCTCGT CATGCTTCCT CTCAACCGTC GAATCATTAA AGCCACCGGA GTCGCAGCCA AAACAGCCTG GTCCGGTGCA GCCTACAATC TCGTCCTCTA CTTACTTGTG AGCCACGTTC TTGGATCGGT TTGGTACGTT TTATCGATCC AGAGACAACA CGAATGCTGG AGAAGAGAGT GTATTAAAGA GATGAATGCA ACGCATTCAC CATCTTGTAG TCTCTTGTTT CTAGACTGTG GATCGTTGCA GGATCCAGGT AGACAAGCTT GGATGCGGAT CACTCGGGTT CTGTCAAACT GTGATGCACG CAATGACGAT GACCAACATT TTCAGTTTGG TATGTTCGGT GATGCGTTCA CTAATGATGT CACTTCCTCT CCTTTCTTTG ATAAATACTT CTACTGTCTT TGGTGGGGTC TCCGTAACCT CAGTTCCTAT GGACAGAGTC TTGCAGCAAG TACACTGAGT AGTGAGACTA TATTCAGTTG TTTCATTTGT GTCGCGGGTC TCGTTTTCTT CTCCCATCTC ATTGGAAATG TTCAGAACTA TCTGCAATCG ACGACTGCTA GGCTAGACGA ATGGAGAGTC AGAAGAAGAG ACACAGAGGA ATGGATGCGA CATAGGCAAT TGCCAGAAGA GTTACAAGAG CGTGTAAGGC GATTCGTCCA ATACAAATGG CTAACGACTC GTGGAGTCGA CGAAGAAGCC ATTCTACGGG CTCTACCGTT GGATCTTCGC CGCCAGATCC AACGACATCT CTGTCTTGCC CTCGTTCGCC GTGTGCCATT CTTTGCGCAG ATGGATGACC AGCTCTTGGA TGCGATATGT GAGCGCCTAG TTCCGTCCTT GAACACAAAA GACACCTATG TTATACGCGA AGGCGATCCT GTGAACGAGA TGCTTTTCAT CATTAGAGGT CAGATGGAGA GTTCAACTAC AGATGGTGGA CGGTCAGGGT TCTTTAACTC CATCACGCTT AGACCAGGAG ATTTCTGCGG TGAAGAGCTT TTAACCTGGG CTCTAGTGCC AAACATTAAT CATAATCTCC CATTGTCCAC GAGAACTGTG AGGACTCTCT CCGAAGTAGA GGCTTTCGCT CTCCGAGCAG AGGACTTGAA GTTCGTAGCT AACCAATTCA GACGTCTTCA CAGCAAGAAA CTCCAACATG CTTTCAGATA CTATTCGCAT CAATGGAGAG CATGGGGAAC TTGTTTTATA CAAGCTGCAT GGAGACGATA CATGAAGAGG AAGTTGGCAA TGGAGTTAGC TAGACAAGAG GAAGAAGACG ATTACTATTA TGACGATGAT GGAGACTATC AATACGAAGA GAACATGCCT GAAAGTAGTA ACCACGGAGA CGAAAACAGC AACAATAATC AGAATTTGAG TGCGACAATA TTAGCGTCTA AGTTCGCAGC TAATACGAAG AGAGGTGTTT TAGGGAACCA AAGAGGGTCT ACAAGAATTG ATCCTGATGA TCCAACTTTG AAAATGCCTA AAATGTTTAA ACCAGAGGAT CCAGGGTTCT TCTGA
Length2115
Protein Sequence
Protein Residue
Map Locationscaffold_5: 12913289.. 12915960
Download Sequence
A.thaliana
AGI-codeAT3G48010.1
Descriptioncyclic nucleotide-gated channel 16
TAIR curator summarymember of Cyclic nucleotide gated channel family
Alias[ATCNGC16][CNGC16][CYCLIC NUCLEOTIDE-GATED CHANNEL 16][cyclic nucleotide-gated channel 16]
Gene coexpression
MR
MR Locus Description
1.73205 Ahg329812 RAB GTPase homolog B1A
6.9282 Ahg921207
11.3137 Ahg488773 Inosine-uridine preferring nucleoside hydrolase family protein
27 Ahg937299 C2H2-type zinc finger family protein
27.6948 Ahg484574 ribosomal protein L12-B
33.2566 Ahg893437
33.9853 Ahg914795
39.5727 Ahg337325 Galactose oxidase/kelch repeat superfamily protein
40.8412 Ahg927040
44.0227 Ahg915034
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression