Annotation |
Description | jgi|Araly1|348635|fgenesh1_pg.C_scaffold_5002027 |
Sequence |
ATGTTCAATA AGTTTGGTTC GACGTCGGAG ACTCTAAGCA AAGCTTCAGC TGTGGTGCAC CGGATCGGCA CTGACGCTCA TCTTTATGAT GATCCGGAAG ACGTCAACAT TGCTCCACTT CTCGATAGCA AGTTCGAATC TGAGAAATGT GAAGCTCTTA AGCGTCTCCT TGCTCTTATC GCTCAGGGCT CTGATGTCTC CAATTTCTTC CCTCAGGTGG TGAAAAATGT GGCGTCACAG TCATCGGAAG TGAAGAAGCT TGTTTACTTG TATTTGCTAC AATATGCAGA AAAGCGTCCA AATGAAGCGT TGCTATCGAT CAACTATTTT CAGAAGGACT TGGGGGATCC AAATCCATTG GTTAGGGCTT GGGCACTTCG TACAATGGCG GGGATTCGCT TACATGTTAT TGCACCTATT GCACTCGCAG CTGTGGGTAA ATGTGCTAGG GATCCAGCGG TTTATGTCCG GAAATATGCT GCAAATGCTC TTCCGAAGTT GCATGATTTG CGGCTGGAAG AACATGCTTC TGCGATTGAA GAGCTAGTTG GGATACTGTT GAATGACCAT TCTCCAGGAG TAGTTGGAGC TGCGGCAGCG GCATTCACCT CCATCTGTCC AAATAACTTC AAACTGATTG GAAAGAACTA TAAGAAGTTG TGCCAGATTC TTCCTGACGT AGAAGAGTGG GGTCAGATAT TACTCATAGG AACTCTTTTG CGCTATGTGG TTGCTAGGCA TGGACTTGTA CGGGAATCTT TGATGTTGTC CCTACATGGT ATGGATAGTA ATGGCTTCTG TGAGAAGGAT GGCCTAGTCA GAGATCTTAC ATTGGATAAA GAAGAAGATG GTGATAAAAG TGATTCATTT GATGTTAATC TGGTCAGCCT TGTATCTAAA TGTTACATTG AAGGTCCAGA TGAGTATCTA TCAAGATCTA GTTACACCGA TACAGTGTCA TCTGCTTTCG ATAGCAAAGA GACCACATCT ATTGCACATA ATGAAGATGT TAAGATCCTG CTTCAGTGTA CATCCCCATT GCTATGGAGT AATAACAGTG CGGTTGTACT AGCAGCAGCT GGCGTTCAAT GGATAATGGC GCCTCTGGAA GATGTTAAGA AAATTGTTAA ACCGCTCTTG TTTTTGCTTA GGTCATCCAG CGCCTCCAAA TATGTGGTCC TCTGCAACAT CCTAGTTTTT GCCAAAGCAG TCCCTTCTCT CTTTGCTCCA CACTTCGAAA CTTTCTTTAT TTGTTCCTCA GATGCATATC AAGTTAAAGC ATACAAGCTG GAAATGCTTT CTCTCATTGC TACCACTTCA TCTATCTCTT CAATTTTGAG AGAGTTTGAG GATTATGTTA AAGATCCAGA CAGGAGATTT GCGGCTGATA CAGTTGCAGC AATTGGTTTG TGTGCAAAAA GACTGCCAAC AATTCCAACT ACATGTCTTG ATGGATTATT AGCACTAGTT CGACAGGAAT CTTTTGCTGG CGATTTTGAG TCAGTGGATG GAGAAGCTGG AGTGTTGGTG CAAACCGTAA TGTCGATTCA GACTATCATA GAGCGAGATC CCCTTCGTCA TGAGAAAGTT TTAATTCAGC TGTTTCGTAG TCTGGATTCA ATCAAGGTAG CTGCTGCTCG TGCAACTATT ATTTGGATGG TGGGGGTCTA CTGCTCTTTG GGTCATATCA TTCCTAGGAT GCTTACCACA ATAACCAAGT ACCTTGCATG GAGCTTTAAA TCAGAGGCAT CAGAGGCAAA ACTTCAGATT CTTAATGCTA CTGCTAAGGT TCTAAAAAGT GCAGAGGCTG ACGACTTTCA GATGTTGAAA AGGGTTGTGA TTTATGTGTT TGAATTGGGC GAATGTGACT TAAGCTATGA TGTTCGTGAT CGAACCCGTT TCCTCAAGAA ACTGCTGTCA TCCAAATTAG CTTGTCATGA GCCGGCAGAA GACAGTGTTG CATCACAAGA AAATATCGCT ACGCATGTTG TGGAACATGT CTTTGGAAGA AAACTGAAAC CTTTTTCACC TTTAGCCCTG CACAATCGTT TTTATCTTCC TGGATCTCTA TCACAGATAG TTCTTCATGC AGCCCCTGGA TACGAACCTC TTCCAAAGCC CTGCAGTTTT GTGTTTGAAG AACAAGACCA GCTGTCAGAT TTAGACAGAC AAAGAGAGGC CGCAGCTGAT TTAGATGGTT CTCAGGAATC ATCTGAAACA GTGGATGACG ATGGCTCCTC TGATTATGAC TCTGAATCTT CTATTGGTTC AGATTGCAGC AGTGACGGTG ATGAAAGAAC GGTGTCTAAT GGTGCCAATG ATCCAGCTGC TCCTTTAATT CAAATTTCAG AGACTTCTGT TTCCGCTGAC CAAGAAGAAC TAAGGTCCAA AAAGGCCCTG GATTTGTGGT TAGATGATCA GCCAAGTACA TCAAACCAAA CTCCATCTGC ATTAAATAGT AATCAGAGCT CTTATGCGAA GATATCCATT GGTGATATAG GAAGCCGAGT GAAGCCTAAA AGCTATAGTC TCTTAGACCC TAGAAATGGC AGTGGCTTGA AGGTAGACTA TGCCTTTTTA TCTGAAGTCT CTACTGTATC TCCATTACAT GTTTGCGTAG AAGTTCTGTT TGAGAACAGT TCTGCTGAAC CTATCCTGGA GGTGAATTTG GAAGATGAAG AATCGATGAA GGTAGCAGAC TCTTCTGAAC AGACTTTGGT TGGTAAAGCA AATGCATCTT ACAACAATGT GCCAACTCTA ATTCCAATGG AGGAAATCAG CTGCCTTGAA CCACATCAGA GCGCAAAGAG GCTTATCCAG GTTCGGTTTC ATCACCACCT GCTTCCCATG AGGTTAACCT TACATTACAA TGGAAAGGAG GTTCCTGTCA AGTTACGACC TGATCTTGGA TACCTTGTGA AACCATTTTC AATGAGCATC GAGGAATTCT TAGCCACAGA ATCTCGATTA CCTGGAATGT TTGAGTATAG TCGAAGGTGT ACTTTTGACG ATCATGTTAA AGATTCAAGA ATGGAGAATG GGAAAGACAA ATTTCTCAGC ATCTGCGAGT GTATAACACT AAAGGTGCTT AGCAACTCAA ATCTACACCT TGTGTCTGTG GATTTACCAG TTGCAAACTC ACTCGAAGAT GCAACTGGTC TGCGATTAAG ATTCAGCAGC AAAATCTTGA GCAGTGAGAT CCCTCTTTTG ATTACCATCA CAGTCGAAGG CAAATGCACC GAAGTTCTGA ATATAACAGT CAAGATCAAT TGCGAAGAAA CGGTTTTTGG TTTAAACCTG TTGAACAGGA TAGCTAATTT CATGGTTGAG CCGTCTTCGT CAGCCAGTTG A |
Length | 3351 |
Protein Sequence | |
Protein Residue | |
Map Location | scaffold_5: 16526370.. 16531363 |
Download Sequence |
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A.thaliana |
AGI-code | AT3G55480.2 |
Description | protein affected trafficking 2 |
TAIR curator summary | |
Alias | [AP-3 beta][PAT2][WAT1][beta-subunit of adaptor protein complex 3][protein affected trafficking 2][WEAK ACID TOLERANT 1] |
Gene coexpression |
MR |
MR | Locus | Description |
5.2915 |
Ahg944981 | |
6.63325 |
Ahg920270 | calmodulin binding;purine nucleotide binding |
7.93725 |
Ahg921297 | MA3 domain-containing protein |
8.544 |
Ahg490219 | pre-mRNA splicing factor-related |
16.2481 |
Ahg473664 | |
16.7033 |
Ahg898458 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein |
22 |
Ahg495431 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
25.5147 |
Ahg495211 | PLAC8 family protein |
26.0576 |
Ahg939856 | Protein of unknown function (DUF668) |
26.9815 |
Ahg472456 | Endoplasmic reticulum vesicle transporter protein |
|
RNA-seq |
Seasonal expression (July 2011 to June 2013) |
|
The four seasons |
|
Growth Chamber expression |
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