Detail



ID : Ahg350906

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|350906|fgenesh1_pg.C_scaffold_6001499
Sequence
ATGGTGAGAA ACGGAGTGTT TGGTCAGGTT ATGGAAGAAA GAGATAATCC AGCATTCTTC AAGATTCTTC GAAGGGAAGA TTTTTCGTCT GAAATGATGA GAATGATTCC GCATCACTTG ATAAGAAGCA TCTCCGACAA GTCTTCGTCG TTTAAGATGG TCTTAAGAGT ACCATGGGGA AGCTCATGGC AAGTTAAAAT CTCCAAGAAC CCAATTTTTC ACTACATGGA AGATCGTGGT TGGAACCAGT TTGTGAATGA CAACGGCTTG GGTTTAAACG AGTTTCTTAC TTTCACTCAT GAGGCAAATA TGTGCTTTAA TGTAACCATA TTCGAGGCAG ATGGTACGGA GATGCTTAGA CCAAGACAAC CTTCAACCAT TGCTTCTAGT TCCGGTCGGA ACAAGAGAGA AGAGAAGAAG AGCATCTACA TAGATGTGAA GAAGGAAGAA GAGATAGAGT CTTGGTCTGA ATCGAGCTAT GCTGGTCATA AAACAGCTGA ATCTACAAGT GGGAGATTGA AGCAGAAACA GGAGCTTAAC TTGAGAAAGA AGGAAGCCGA TAAAACCGAA AAATCCAAGA AGAGGAAGAA GAAGAAGGTG GATACTGTTT GTAACGATTC TGAAGCCGGC ACTTCATCTC TTGTTCCAGA ATTCAAGCTC ACCATAAAGA AATCACACCT CTTGTTCTTG GGGATCCCGA AGAAGTTTGT GGATATGCAT ATGCCAAGTG AGACAAAGAT GTTCAAGATT CATCATCCGA GAGGAAAGAA GTCATGGGAG GTTTGGTATG TGGTCAATGA TGTACAATCA AGATTCTCTG GTGGATGGAG TCGTTTGGCC AAAGAGTTAG GTTTAGTGGT CGGAGATGTT TGCACGTTTG AGCTCATCAA ACCGACCGAG ATGTGTGTCA AAGTCTCCAA AGAATAG 
Length927
Protein Sequence
Protein Residue
Map Locationscaffold_6: 7118998.. 7120429
Download Sequence
A.thaliana
AGI-codeAT5G18000.1
DescriptionVERDANDI
TAIR curator summaryEncodes VERDANDI (VDD), a putative transcription factor belonging to the reproductive meristem (REM) family. VDD is a direct target of the MADS domain ovule identity complex. Mutation in VDD affects embryo sac differentiation.
Alias[VDD][VERDANDI]
Gene coexpression
MR
MR Locus Description
5.47723 Ahg913932
8.48528 Ahg910857 LisH and RanBPM domains containing protein
11.225 Ahg470414 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
42.6615 Ahg949384
43.7836 Ahg473744 Seven transmembrane MLO family protein
47.5395 Ahg929682
53.2447 Ahg947899
56.9298 Ahg950104 SPFH/Band 7/PHB domain-containing membrane-associated protein family
72.8492 Ahg347478
83.6242 Ahg897864
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression