Detail



ID : Ahg351018

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|351018|fgenesh1_pg.C_scaffold_6001611
Sequence
ATGTCGAAGA ACCCATCTCA AGAAGACGAC GAAGCCATGC CAATCTCCGA AGTAGTAATA AAGAGATTCA AGCGTTTAAG GCTCGTATTC GAGCCGTCAC TAGGAGTCTT GGGTTTTTTC TTGGTGGGTT TGTGTTTAGT CTTCAGCTTC TTCTATCTCG ATTACAGAAC CGTCGCTAAA ACTAAAAGTC ATGACTTTTC GGATCAATCG GAGAGATTTC TTTGGCTTAA GGAGCTTGAT GGGTTTGTAG ATAACAACAC CAAAGTTGGG TTTCTTGAAG AGAGTGGGAA TAGTTGTGAT TTGTTCGATG GGAAATGGGT TTGGGACGAA TCGTATCCGT TGTATCAGTC TAAAGATTGC ACCTTTCTTG ATGAAGGATT CAGATGCACT GAGTTTGGGA GACTTGATTT GTTCTATACT AAGTGGAGAT GGCAACCTAA CCATTGTGAT TTGCCCAGAT TTGATGCCAA GTTGATGCTG GAGAAGCTAA GGAACAAGCG GCTGGTATTT GTAGGAGACT CAATTGGAAG AAACCAATGG GAGTCTCTTC TTTGTATGCT AGCTTCTGCA ATCAGGAACA AGAATTTGGT TTATGAAGTG AACAATAGAC CCATCACAAA GCACATGGGC TTCTTTGTGT TCAGGTTTCA TGACTACAAT TGCACTGTTG AATACTATAG AGCACCGTTT TTGGTTCTCC AAAGCCGTCC ACCTAGTGGA TCACCAGAAA AGGTAAAGAC GACACTTAAA CTAGAGACGA TGGAATGGAC TGCCGACAAG TGGAGAGATG CGGATATATT AGTGTTTAAC ACAGGACATT GGTGGAACTA CGAGAAAACT ATTCGCGGAG GTTGTTACTT TCAAGAAGGA GAAAAAGTGC AAATGAGAAT GAAGATAGAG CATGCGTATA GACGAGCTAT GAAGACCGTT ATGAAATGGA TACAAGAAGA GGTTGATGCA AACAAGACAC AGGTCTTCTT CCGCACATTT GCCCCTGTGC ATTTCAGGGG AGGAGATTGG AGAACCGGAG GAACATGTCA TATGGAGACA CTGCCTGATT TTGGAGCCTC TCTGGTTCCA GCAGAGACAT GGGATCATAT AAAGCTCCTT CAAGATGTCT TGTCATCGTC TCTTTACTAC TTGAAAACAT CAGAGACGGT TGAACTGAAA GTGTTGAACA TAACAGCCAT GGCTGCTCAA AGAAACGATG GTCACCCATC ACTGTACTAC TTGGGCTTGG CTGGTCCTGC GCCATTCCAC AGGCAAGACT GCAGCCATTG GTGTCTCCCT GGAGTTCCTG ATTCGTGGAA TGAGCTTCTT TATGCATTGT TTCTAAAGCA TGAAGGCTAT TCAAGTCCAA TATCAAACAA TAGCGATACA GACAACTTTA CATAA 
Length1395
Protein Sequence
Protein Residue
Map Locationscaffold_6: 7693106.. 7694946
Download Sequence
A.thaliana
AGI-codeAT5G19160.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 11
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL11][TRICHOME BIREFRINGENCE-LIKE 11]
Gene coexpression
MR
MR Locus Description
63.0714 Ahg914797
72.7599 Ahg487088 RING/U-box superfamily protein
73.1779 Ahg921261
81.3204 Ahg942046 flowering promoting factor 1
99.3982 Ahg899355
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression