Detail



ID : Ahg351685

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|351685|fgenesh1_pg.C_scaffold_6002278
Sequence
ATGTGCCAAA ACCAGTGTGA AGAAAGCTTG TCTCGAGATG TGAGGATGAT AGTTTTCCCA AAAGACCGTC GTGGCCATCT GATGGTTCTA TGTTTGAGCT CCAAACAAGT GGTTGAGCTT CAAATATGCT TTCGTAAATC ACTAAAGTCA TTGTCATTTA ACTGTCATGT GAGCATATGG AGGAAATGGA ACAGAAGTTC TTGGACGTGG CAATGGACCC ACTACAAGAC TACTAAGAGT CTAAGACACA CCATTGAATT GGCCAGTAGA GTTCATGAGG GTACAAAGAA AGATTGCTTG TATTTGGATG TAGAACTTGG TACGTTTAAG TTCAGGACCT ATGTCCCTGG GCTAGTCATT CGTTCTGGCC CTGATACTGA AGTTTACTGG AATGATGCAA GGCAGAAGAA GCCTGAACCT GTTCATAAGC GTCCTTTACC ATCATCTGAA TTAATGATGT TCTCTTCCTA TGCAGTTGTG GCAGAGAGTT ATGTGCAGTG GTCTCCTTTA GGTACATACC TTGTGACACT TCACAAGCAG GGGGCAGCTG TTTGGGGTGG TACTGATACA TTCACGCGTC TCATGCGTTA TCAGCATTCT ATGGTCAAAC TTGTTGATTT CTCGCCAGGT GAGAGATATC TTGTAACTTA CCATAGCCAA GAACCAAGCA ATCCGAGAGA TGCAAGTAAA GTAGAGATTA AGGTCTTTGA TGTGAGAACC GGGAGGATGA TGAGAGATTT CAAGGGTAGT GCTGATGAGT TTTCAATTGG AGGACCTGGT GGTGTTGCTG GCGCCTCTTG GCCTGTTTTC AGATGGGCTG GTGGAAAAGA TGATAGATAC TTTGCCAAGC TTAGCAAAAA CACCATCTCT GTCTATGAGA CTGAGACTTT CAGCCTAATA GACAAGACAT CCATGAAGGG TGGTGGAAAC CAACCTGCTA AGGTTGCTCT AGTCCAAATC CCGAGCAAGG TGGAGCTGAG GCAGAAGAAT CTCTTCAGTG TGAGCGACTG CAAGATGTAC TGGCAGAGTA GTGGAGAGTA TCTTGCTGTT AAGGTTGATC GATACACAAA AACTAAGAAG AGCACATACT CTGGATTTGA GCTTTTCCGT ATCAAAGAAA GGGATATTCC CATCGAGGTT CTTGAGCTGG ATAACAAGAA CGACAAGATC ATTGCTTTCG CTTGGGAGCC CAAGGGTCAC AGGTTTGCTG TGATTCATGG TGACCAACCA AGACCAGATG TCAGTTTCTA CTCGATGAAG ACCGCACAAA ATACTGGAAG GGTTTCAAAG CTCGCAACGT TGAAGGCCAA ACAAGCCAAT GCCCTCTTCT GGTCGCCCAC AGGAAAGTAC ATCATTCTTG CTGGGTTAAA AGGTTTCAAT GGCCAGCTTG AATTTTTCAA CGTGGATGAG CTCGAGACAA TGGCAACATC TGAACACTTC ATGGCCACGG ATATCGAATG GGACCCAACT GGAAGGTACG TTGCAACCGC AGTGACATCA GTTCACGAGA TGGAGAATGG GTTCACCATG TGGTCTTTCA ACGGGAATTT GGTTTACCGG ATACTGAAGG ATCATTTCTT CCAGTTGGCT TGGCGTCCAA GACCGCCATC ATTCTTAACT GCAGAGAAGG AAGAAGAGAT AGCAAAGAAC CTGAAGAAGT ACAGCAAGAA GTATGAGGCA GAGGATCAGG ACGTATCGTT GCTGTTGAGT GAACAAGACA GAGAGAAGAG GAGGGCATTG AAGGAAGAAT GGGAGAAATG GGTGATGCAG TGGAAGTCTC TGCATGAAGA GGAGAAACTC GCGAGAAAAA ATCTTCGGGA TGGTGAAGTT AGTGATGTGG AAGAAGATGA GTATGAAGCC AAAGAAGTTG AGTTTGAGGA TCTTATTGAT GTCACTGAGG AAATCGTTCA AGAGTCGATA GATTCGTCGG TCTTTGCACT ACAGAATATG GAAGAGGTTG CTGATCCTGT TAATAGTGTT ACCCTTACTT TGCATGATGA TAAGCAATGC GCGTTATGGG ACTGTATGCG TGTCCACGCA GATGGTTCTC GGTATTGCTG CATACCACAC ATGGACTTTG CCCTTGCAGA AAGGACCATT CAACGACCAC ATAACATGGC CAATGTTCGT TCGTTTATAC AGTTGGATAA GCTTGTTATT CCAAAACTCG TCAACCATTT AAGAAACCCG GCACTCGGTA TCACTGGAAT ATCCAATCTA CAACATCTAA ACGTTCTGAA TGCCTCTCCC CTTGACCAAC ACATACGGTT CCCAACTGAT CTTGATGAGA GGGAAGAGTT TAATATTTGG GTTTTCATTT GGCGATTTGT TCCTAACCGA CAGCTATGGC GTCAGGGAAA TGATACACGT CGAGGGAACT ATGTCAGAAC GCGTTTCTAT CGACTCTTCC CTGCGGTTGG TGGAACATCG TGGAGGTTAT TTAGGTACAC AATCAACAGT AATACAGTTG CACTTTACGC AATGGAGTAC TGTAAGTCAC TCGCTCATCC ACCGCCCGTC GTTGGCGTCT ATTACAGGAG AACTTGTGTC AATGCTTCTG ATGGAGTAGA ATATTTGAAT TCAGCCACAG TAACTGATTT ACACTCGAGC AAGAACAAGA CGGAACAAAA CGAGATGCAT TCAGAATTTC TGGCCAACAA GGGAGTACAG CATCATACAC CAGCTCGGGA CTTAATGGCC TACAGTGATG GTATGATAAG TCCCGAGCTG CTGTCGGTTA GGAACAAATC GCCAAATGAA AACCCAAATT GGATCTCAGA CCCAGAGAGG ATGGTTAATT CAGGGAATGA AAAATCCATA AGGATTTCTG GTCTAAGATC AAGACCGTGG GATGAGATTA GGAATGCAGC AAACAAGAGG AAAACTCCAC CTTGTTCCCA TGAGCTTCAT CCGAAGAGCA AAGCCAGGAA ACAAAAACCA GATGCTGAAA GAGCTGCTAA GAGAGAGTTG TTACGTGGAG TCTCTAAAAA TGTCTATAAA CAGAAAAGGC CGAGTAGTAT TTTCATGGAA AAGTCTGTTG TGCTGCCAGA TTTCGAATTC CAGAGCCCAG TGTTTCGATA TGAAGCACCA ATCTCAAGTC CTTCCCCATC TTTTACTAAA AGAACATCTA AAGAGACAAC ATGCCAAGCA AGGAGATTCC CTGACTTCTC GGGGAAGACA AGAGATTATT ACTTCGGAAG AGAATTTTCT GGCGATGACT TAGGTGATTC AGATATGTTG GCTTATTACA ACAGTCTTGA AGAAAGAGAA GCTGCCTCAG CTAATCTTAA GGACAATGGT CATGTAGTGA TAAGTCCTTC CTCTTTGATT TCGAAAGTGA TCCATATTAC TCCTTCCTCC CAGCATTCAG AGATGGATGA AGAGGAAGTC TTTGGAAGGG CTGTTGCATT GTTCATTATG GCTTTTCAAA AGTTCGAGAA AAAACTGAAA CTAGCAGCTG AGAAGAAATG CTCAGAAATT ATAGCATCGG TCTCCGAGGA GATACATCTA GAGGGGAAAG AAGACGAGTT ACCTCGCCAA AACTCAAGGA AAGACACCAA AAACTCTCTC ATAGTTTCCA CAAGCCTAAA CTCACGAGGA CACCAAATAC TCAAGCATCT AGAAGGAACC ATCAAGACAA AGCTGGACAA TGCCTCCAAA AGAATCGAGT ATGTCAACAA TTGTGCAAAA AGATTGAAGA GGGATTTGAA GAAGAGCGTT CGAGAGTATT TGATGGAAGA CTAA 
Length3744
Protein Sequence
Protein Residue
Map Locationscaffold_6: 11631352.. 11638790
Download Sequence
A.thaliana
AGI-codeAT5G27640.2
Descriptiontranslation initiation factor 3B1
TAIR curator summaryencodes a member of eukaryotic translation initiation factor 3B family.
Alias[ATEIF3B-1][ATTIF3B1][EIF3B][EIF3B-1][TIF3B1][ARABIDOPSIS THALIANA TRANSLATION INITIATION FACTOR 3B1][EUKARYOTIC TRANSLATION INITIATION FACTOR 3B][EUKARYOTIC TRANSLATION INITIATION FACTOR 3B1][translation initiation factor 3B1]
Gene coexpression
MR
MR Locus Description
3.16228 Ahg932661
5.2915 Ahg477691 RmlC-like cupins superfamily protein
5.65685 Ahg920346 myo-inositol oxygenase 1
9.16515 Virus1229
15.4919 Ahg319832 F-box family protein with a domain of unknown function (DUF295)
24.6779 Ahg899647
25.2587 Ahg925636
27.4591 Ahg925635
28 Ahg924110
31.305 Ahg911073 F-box family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression