Detail



ID : Ahg352664

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|352664|fgenesh1_pg.C_scaffold_6003257
Sequence
ATGGCGCAGA AGCAACAGAT CTTTCACCAA CAACGACCAT TCTCTTCCTC TCCTCGTTCT TATTCTTCAA TCTCAGTCCG TCCCATCTCT GTCCGTAGCC GCAACGGTCT CCTCCTTCTC CTTCTCGCTC TCTTCTTTCT CCTCGGTGTA TTCTTACCCT GGCCAGGATC TCCCTTATTC CAGTTTCCAA ACAGACTTTC TTCTTCTTCT TCTTCTCTGT CACCGTCTCG GCAGTCCAAA TGGCACGACT ATACCCTTGC TCAGGCCGCT AAGTTCGTGG CCAAGAACGG CACTGTGATC GTCTGCGCCG TGAGCTCACC ATTCTTGCCT TTTCTCAACA ACTGGTTGAT TAGTGTTTCT AGACAGAAGC ATCAAGAAAA AGTCCTCGTG ATCGCTGAGG ATTACGCTAC TCTGTATAAA GTTAACGAGA AGTGGCCTGG CCATGCCGTT CTTATTCCTC CGGCGCTCGA TTCCAAAACC GCATACAGTT TCGGTTCCCA GGGTTTCTTC AATTTCACAG CTCGAAGGCC GCAACATCTC TTGCAAGTTT TGGAGCTAGG TTACAATGTT ATGTACAACG ATGTTGATAT GGTTTGGTTG CAAGATCCGT TTCAGTATTT GGAGGGAAGC CATGACGTGT ACTTCACGGA TGACTTGCCT CAAATAAAGC CTTTGAATCA CTCTCATGAT TTACCACATC CGGGTCGAAA CGGAGAGACG TATATATGTA GCTGCATGAT TTACTTGCGA CCCACTAATG GTGCAAAGCT TCTAATGAAG AAATGGAGTG AGGAACTTCA ATCCCAAGCT TGGTCTGAGT CCATCCGTTT TAAAGCCAAT GATCAGCCTG CTTTTAACTT GGCACTTAAC AAAACAGCTC ATCAAAGCTC TCTAACAGAT GAGCTTTTTG GGTGA 
Length915
Protein Sequence
Protein Residue
Map Locationscaffold_6: 22624021.. 22625538
Download Sequence
A.thaliana
AGI-codeAT4G01770.1
Descriptionrhamnogalacturonan xylosyltransferase 1
TAIR curator summaryEncodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT1 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.
Alias[RGXT1][rhamnogalacturonan xylosyltransferase 1]
Gene coexpression
MR
MR Locus Description
11.4891 Ahg913498
12.6886 Virus3764
14.6629 Ahg915583
15.8745 Virus2875
19.9499 Ahg941843 Defensin-like (DEFL) family protein
29.3939 Ahg314895 cyclic nucleotide-gated channel 12
51.2543 Virus0993
53.1789 Ahg491129 Arabidopsis protein of unknown function (DUF241)
56.4801 Virus1397
60.5227 Ahg929883
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression