Detail



ID : Ahg354000

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|354000|fgenesh1_pg.C_scaffold_7001173
Sequence
ATGAATAATC CAAGATCGGT AAGTCCTTTG GTTTCTCCAG CAAACCACCC AGATCAACGT CAATCCAGTT GCGGAGAATT CTCAAGATTA GAGAAACGAA ACGGAGCAAG GAAGATGATG AAGTTTCATT CCAAGTCCAT GCCCCGAGGT GCCATGTTTC TTGATCAAGA AGCTTCTAGA AACTTCCATG ACAAGAGGTA TGACCTATTC AGGACCATGT CCGGGAAGCT CGAACGTCAG ATATCGAATT TACGGGGGAA ACCCACTGAG TGTTCGTTGC AGGATCATAA AGAGATCACT GAATCTTTAA CCGCTGATAG ATACTTTGAT GCTCTTCAAG GCCCCGAACT TGAAACTCTC AAGGAGAAGG AGAAGATAGT TTTGCCAGAG GACAAAACGT GGCCGTTTCT TCTGCGGTTT CCAATCACAT CGTATGGGAT GTGTCTTGGA GTAAGCAGTC AAGCCATCAT GTGGAAGACC TTAGCAACCA CAAACGCCGA GAAGTTCTTG CACGTGACAC AAGTGATCAA CCACGTGCTC TGGTGGATCT CCCTCCTTCT CCTCCTCGCC GTCTCTATCA CTTACCTCCT CAAAACCATC CTCTACTTTG AGGCGGTTCG CCGTGAGTTT CGGCATCCAA TCCGAGTCAA TTTCTTCTTC GCTCCTCTCA TATCAATCCT CTTCTTGGCG CTTGGAATCC CACACTCCAT CATCTCACAT CTTCCCTCTA CACTTTGGTA CTTCCTTATG GCTCCCATCT TGTTTCTTGA GATGAAGATT TACGGACAGT GGATGTCTGG TGGACAACGA CGCCTCTCCA AAGTCGCTAA CCCTACAAAC CACCTTTCGA TTGTCGGTAA CTTTGCCGGA GCACTTCTAG GAGCATCCAT GGGGTTGAAA GAAGGACCAA TGTTCTTCTT TGCTGTGGGA TTGGCATATT ATTTGGTCTT ATTTGTGACT CTCTATCAGA GACTTCCCAC TAACGAAACC TTACCTAAAG AGCTTCACCC TGTTTTTTTC CTCTTTGTGG CTGCACCGGC TGTCGCTTCC ATGGCCTGGA CCAAGATCTC TGCCTCTTTC GATCTCGGCT CGCGCCTGGC TTACTTCATC TCCTTGTTCT TGTACTTCTC TCTGGTTTGT CGGATTAACT TTTTCCGTGG ATTCAAATTC TCGCTAGCTT GGTGGGCTTA CACGTTTCCG ATGACGGCAG TGGCCAGTGC GACGATCAAA TATTCAGACG AAGTCACGGG AGTAGCAACT AAGATACTGT CGGTTGTGAT GTCGGGAGCA GCAACTTTGA CAGTGATAGG TGTGCTTGGG TTGACGGTGA TGCATGCTTT TGTCCAACGT GATCTCTTCC CCAATGACGT CGTCATTGCC ATAAGTGCAG AGCAACCGAA GCAGAGGAGA TGGTTCAAAC AGCTCACAAA AGAAAGTTCT AGAAATAGTG AGAGATGTCT CAAGGTTTTG GACCCGGAAG ATAGTCAAAT AGATCTAGAA TCTCCTCCTT TAGTAAATGT AGATAGTTCC ACGGTGCAGA ATTCAAATTA A 
Length1551
Protein Sequence
Protein Residue
Map Locationscaffold_7: 5545124.. 5546942
Download Sequence
A.thaliana
AGI-codeAT4G27970.1
DescriptionSLAC1 homologue 2
TAIR curator summaryEncodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.
Alias[SLAH2][SLAC1 homologue 2]
Gene coexpression
MR
MR Locus Description
30.9839 Ahg951821
44.3396 Ahg933363
69.6491 Ahg493352 HXXXD-type acyl-transferase family protein
70.6753 Ahg917392 basic helix-loop-helix (bHLH) DNA-binding family protein
75.8947 Ahg892007
80 Ahg927887 MATE efflux family protein
88.4251 Ahg316517 Glycosyl hydrolase superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression