Detail


ID : Ahg471265

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|471265|fgenesh2_kg.1__1219__AT1G11290.1
Sequence
ATGAGCTCTC AATTGGTGCA TGTCTCCACA GTGTCTCAAA TCCCGCCAAT TTCGTCGAGC CATCGTCACT TTCTCTCCCA GAGAAATTAT ATTCCGGCTA ATGTCTACGA GCATCCAGCG GCTCTTCTTC TTGAGAGATG TTCTTCTCTG AAAGAGCTTC GTCACATTCT CCCTCTCGTC TTCAAGAATG GTCTTTATCA GGAGCATCTT TTTCAGACGA AGCTTGTCAG CTTGTTTTGT CGCTATGGCA GTGTCGACGA GGCTGCTCGT GTTTTTGAAC CCATTGATAA GAAACTCAAT GTTCTTTATT ACACGATGCT TAAAGGGTTT GCCAAAGTTT CAGACTTGGA TAAAGCTTTG AAATTTTTCG TTCGGATGAG GGATGATGAG GTAGAGCCTG TTGTGTATAA CTTCACCTAT CTCCTGAAAG TTTGCGGAGA CGAAGCAGAG CTTAGGGTGG GAAAGGAAAT TCATGGGTTG TTGGTGAAGA GTGGGTTCTC GTTGGATTTG TTTGCCATGA CTGGACTTGA GAATATGTAT GCCAAGTGTA GGCAGGTACA TGAGGCCCGC AAGGTGTTTG ATAGAATGCC TGAGAGAGAT TTGGTTTCGT GGAATACAAT TGTGGCTGGG TATTCACAGA ATGGGATGGC GAGGATGGCT TTGGAAATGG TTAATCTAAT GTGTGAGGAG AATCTGAAGC CTAGTTTTAT CACTATTGTC TCTGTTTTGC CTGCTGTCTC TGCTTTGAGG TCGATTAGTA TTGGCAAGGA GATTCATGGG TATGCTATGC GGGATGGATT TGATTCTCTT GTCAATATTG CCACTGCTTT GGTTGATATG TATGCGAAAT GTGGATCTCT GAAAACTGCT CGACTGCTCT TTGATGGGAT GTTAGAAAGG AATGTTGTTT CATGGAATTC AATGATTGAT GCGTATGTGC AGAATGAGAA TCCTAAAGAG GCAATGGTAA TATTTCAGAA GATGTTGGAC GAAGGAGTGA AACCCACTGA TGTATCTGTC ATGGGTGCTT TGCATGCTTG TGCTGACCTA GGGGACCTTG AGAGAGGAAG ATTCATCCAT AAGTTATCGG TTGAGTTGGA ACTTGATAGA AATGTTTCTG TAGTGAACTC TTTGATATCC ATGTATTGCA AGTGCAAGGA AGTTGATACT GCTGCTTCTA TATTTGGGAA ATTGCAGAGC AGAACCATTG TATCATGGAA TGCAATGATA TTAGGATTTG CACAGAATGG ACGTCCGATC GAAGCTTTGA ATTACTTCAG CCAGATGCAG GCTCGGACAG TGAAACCAGA CACGTTTACT TACGTGAGTG TGATAACTGC TATCGCAGAG CTTTCAATTA CACATCATGC GAAGTGGATT CATGGGGTGG TTATGCGAAA TTGTCTGGAT AAGAATGTGT TTGTCACAAC GGCTCTAGTC GACATGTATG CGAAATGTGG TGCTATCATG ATTGCAAGAT TGATTTTTGA TATGATGAGC GATCGTCATG TGACAACCTG GAATGCTATG ATTGATGGAT ACGGGACGCA TGGAATTGGG AAAGCTGCTC TGGAGTTGTT TGAAGAAATG CAAAAAGGAA CCATCAAACC AAATGGTGTC ACATTTCTTT CTGTAATATC TGCTTGCAGC CACTCGGGTT TGGTGGAGGC AGGACTCAAG TGCTTCCATA TGATGAAGGA AAACTACAGC ATAGAACCAT CGATGGACCA CTATGGAGCA ATGGTCGATC TTCTAGGTCG GGCTGGGCGG TTGAATGAAG CATGGGACTT TGTTATGCAG ATGCCCGTTA AGCCTGCTGT AAATGTATAT GGTGCCATGT TAGGTGCTTG CCAGATTCAT AAAAATGTGA ATTTCGCTGA GAAAGTAGCA GAGAGATTGT TTGAGTTGAA CCCGGAAGAT GGTGGGTATC ATGTGCTTCT TGCAAACATA TATCGTGCAG CTTCAATGTG GGAAAAAGTG GGACAAGTGA GAGTTTCAAT GTTGAGACAG GGTCTGCGCA AAACTCCTGG CTGCAGTATG GTGGAGATAA AGAACGAAGT TCATAGCTTC TTTTCTGGAA GCACAGCCCA TCCCAATTCC AAGAAGATTT ATGCCTTTCT TGAGAAGCTG ATATGCCAAA TCAAAGAAGC TGGTTATGTT CCTGACACAA ATTTAATCCT CGGCCTAGAA GATGATGTTA AAGAGCAGTT GCTAAGTAGC CACAGTGAGA AGCTGGCAAT ATCTTTTGGA CTCCTCAATA CAACTGCGGG TACAACTATT CATGTAAGAA AGAACCTGCG GGTTTGTGCT GACTGTCACA ATGCTACAAA GTACATTTCC CTTGTGACCG GACGGGAAAT TATAGTACGA GACATGCAAC GGTTTCACCA CTTCAAGAAC GGTGCCTGTT CGTGCGGAGA TTACTGGTGA
Length2430
Protein Sequence
Protein Residue
Map Locationscaffold_1: 4328204.. 4330633
Download Sequence
A.thaliana
AGI-codeAT1G11290.1
DescriptionPentatricopeptide repeat (PPR) superfamily protein
TAIR curator summaryPentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Alias[CRR22][CHLORORESPIRATORY REDUCTION22]
Gene coexpression
MR
MR Locus Description
9.69536 Ahg497488 eukaryotic translation initiation factor 2
12.1244 Ahg940793 Pentatricopeptide repeat (PPR) superfamily protein
13.8564 Ahg941187 Tetratricopeptide repeat (TPR)-like superfamily protein
17.1464 Ahg893964 dicer-like 4
17.2627 Ahg324042
20.5913 Ahg490109 calcium-dependent protein kinase 22
22.8473 Ahg928124 Tetratricopeptide repeat (TPR)-like superfamily protein
35.7771 Ahg476277 Pentatricopeptide repeat (PPR-like) superfamily protein
38.2361 Ahg489560 RECQ helicase SIM
39.9124 Ahg489815 Mitochondrial transcription termination factor family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression