| Annotation |
|---|
| Description | jgi|Araly1|489560|fgenesh2_kg.6__2694__AT5G27680.1 |
| Sequence |
TTTCCCAGAA AAATTGTCGT TTTTGGTCTC TGATTAACTT CAAAAGGTCT GTGTTTTTGG CGAGAAATTG GTGGTGGAGC ATTCATAGCT AATTCAAACA AGAACAAAAT CACTAGGGTT TGGAGTTCTG GAATTTGGGA TTAACCAGTA GTTATATACG AGTCATTACA GTTTTCTCGT TTCTTTGGGT TTCATTCAGA TCAATTAATG GTTTCTGGAA CTTCCATAAT GCTTTACTAG AATCAACTTG TTGTAGGATC CGTATAAAGG ACTGTCTTTT AGTTGCCTGA ACAGTGTGAA TTCGATGGAT TTGTCTTCTG ATCATGTTGT TATGAAGCTT GTTGAAATGG GTTTTGAAAA GTTGGATGCT TTGGATGCTG TGAAAGCTGT AGGTGGTAAG TCATGTGATG ATGCTGTGGA GTATATTTTG AAGGGACATG ATAGAACTGG TGGATTTGCG CCGGCTAGTT CATTATGTTC TATAGGGAGT ATTAAGATTC TTGGTAAAAG AGCTATGCCA TCTTCGTTTT CTTCGGGTTC AAAGCGTCAG TCTAGTTTGC TTGACCATTT TAGATCTGTG GACCAGAACA AGAAAAAAGG CAACACCTTT GGGATTGCAG AAGTGAATTC TCAGTTAGAA ACGGTGTCTT ATACTTTTAA AGAGCAGATA AAGTCTCTTG CTCCAGTGTT TTTGGAGTCT AGTTGTTTTC CTGAAACAGA ATTGTCAAAT GGTTGCTCTG AGGCTTCATC AACGTGGGAG AAAAGAGTTA ACTCTATACT ACAAAACCGT TTTGGTATTT CATCCCTGAG AAGTTTCCAA AGAGAGGCTT TGTCAACATG GGTTGCTCAT AAGGACTGTC TTGTTCTAGC TGCAACGGGA TCTGGGAAAT CTCTTTGCTT CCAGATTCCT GCATTATTAA CCGGAAAAGT TGTTGTTGTA ATTTCACCTT TGATAAGCCT GATGCATGAT CAATGCCTCA AGCTATCAAG GCACAGAGTC TCTGCTTGTT TTCTTGGTTC AGGCCAACTT GATACTTGCA TAGAAGAAAA AGCAATGCAG GGAATGTATC AGATTATATA TGTTTGCCCT GAGACAGTGG TTCGACTGAT TAAACCACTC CAGAAGCTTG CAAAGACTCA TGGAATTGCT CTTTTTGCAA TTGATGAAGC GCATTGTGTA TCAAAGTGGG GACATGATTT TCGTCCGCAC TACAGGAGAT TATCTGTGTT GCGGGAAAAC TTCTGTGCCA GCAATTTGGA ATTCTTGGAA TATGATGTAC CGATAATGGC ATTGACTGCT ACAGCCACAG TTCACGTACA GGAAGATATT CTTGAGTCAC TTCACCTGTC AAAGGAAACA AAAACTGTGC TTACTTCATT TTTCAGGCCA AATCTACAAT TTTCAGTTAA ACATAGTCGA ACCAAGTTTG CATCTTCATA TGCAAAGGAC TTCCAAAACT TAATTGACTT ATACTCTGAA AAGAAAAAGT CTACCGGGAA AAAGCTAGCA GTAATCTCAC GAGAGTCAGA GGAGCAGACT GATTTTGGTT ATCACGATGC TCAAAACATC CATGAGACAG ATTATGATGA GGATGAAGAG GATCAAGAAA ACTCTCTGGC AAAGAAAAAC AGTTCAAATG GGAAAGAATT GTCAGAAGAG TATCTGGAAG ATGAAACCGA CATTTTCCAG AGTGTTGATG ATTGGGATGT GGCTTGTGGC GAGTTTTGCG CAATGCCTCC TTGTGAACTC CTGGATATAC CTATCCCTTC TGAAAAGCAA AAGGATTTGG AAGGACTGAC AATCATATAC GTTCCTACAA GAAAGGAGAG TGTCAACATT GCTAAATATC TTTGTGGGGT TGGACTGAAG GCTGCAGCTT ATAATGCATC GTTGCCAAAA AAACATCTTA GACAAGTTCA CCAGGATTTC CACGAAAATA AGCTGCAGGT TGTTGTTGCC ACAATTGCGT TTGGAATGGG AATTGACAAG AAAAATGTTC GGAAAATCAT CCATTATGGT TGGCCGCAGA GCTTGGAAGC ATACTACCAA GAAGCTGGTC GAGCTGGAAG AGATGGCGAA TTGGCTGAGT GTGTGCTCTA TGCTGATCTA TCGAGAGCAC CAACACTTTT GCCAAGCCGT AGGAGCAAAG AACAGACAGA GCAAGCATAT AAGATGCTAT CTGATTGTTT TAGATATGGA ATGAAGACTT CACAATGTCG AGCGAAAATA CTCGTGGAGT ACTTTGGGGA GGATTTTAGT TCCAAGAAGT GTAACTTATG TGATGTTTGC AAGGAAGGGC CCCCGGAGCT AGTAAATGTA CGAGAGGAAG CTAATCTTTT GTTTCAAGTA ATCAATGCTT TTCATGTAGA CAATGACTCT GAGCATGCAC CATATGAAGA TTATGGACTC GGCAACAGCA AACAAAAGAA ATTATCCCAC AAGCCAAATC TTCTGTTCTT CATCAGTAAA ATCAGGGAAC AGTGTCAAAA ATTCAAGGAA ACAGATTGTC TTTGGTGGAA AGGTCTTGCC CGTATCATGG AAGCCAAGGA ATACATCAAA GAGCTGGATA ACAAGGATCG TCGAGTTGAG ATTAAATTTA TACAACCAAC AGAAAAAGGG AAGAAGCAAC TAGATTTCGA AGATGACAAA CCACTCTATG TTTATCCAGA AGCCGACATG CTACTTTCGT TGAAACAAGA CAGAACATAC AGCGGATTCT CTGAATGGGG AAAAGGATGG GCAGATCCAG AGATCCGGCG CCAGCGGTTA GAGAGAAGAG AAAGGAAGCC CCGAAGAGAA AGGAAACCCC GAAAAAAGCG AACACGAGGA CCTTCTTCGA AGAAGTTGCA TCCATGGAGA AGCAAAGAAT AATAATCTCA ACCCTCTTAA GTAAGCTCCT TCTTTGCTTT CAATCCCATA TTGAGGCAGA GACATCGCGC CATCGAGAAG TTAAAACTCG TAAATGAGGC CTTGGTCGCT GCGGAAGAGA ATGTAGCAAG GCTTCAAGAA CGTCATGATG TGATCCTCAA AGAGATATGT TCTTATTATC TCGTTAACAC CGAGCTCCAT GAAGCTTTGG TTTCAGCTCG TGCAGCCATT AATGATGCTT CTTCATTTGT CATGGAGCTT AGAAGACTAC AGTTGAATAT CTTAAACTCT TTTTCTTAAT CAAGTTTTTT GGTGCTTATT ACGCTAATTA AAATTAGAGT TTGGGT |
| Length | 3216 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 11950763.. 11955965 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G27680.1 |
| Description | RECQ helicase SIM |
| TAIR curator summary | DNA helicase |
| Alias | [RECQSIM][RECQ helicase SIM] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg476238 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 16.4924 |
Ahg474984 | Protein of unknown function (DUF3741) |
| 21.1187 |
Ahg898458 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein |
| 21.8174 |
Ahg312653 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 27.7128 |
Ahg898366 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases |
| 33.0454 |
Ahg494917 | histidine triad nucleotide-binding 3 |
| 37.55 |
Ahg918552 | Transducin/WD40 repeat-like superfamily protein |
| 38.2361 |
Ahg471265 | Pentatricopeptide repeat (PPR) superfamily protein |
| 41.3521 |
Ahg474924 | regulatory protein (NPR1) |
| 52.5357 |
Ahg470374 | G-box binding factor 4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|