| Annotation |
|---|
| Description | jgi|Araly1|471559|fgenesh2_kg.1__1513__AT1G13980.1 |
| Sequence |
CCCTCCTCGA GATTTTCCGA TCGTGCTTTC CTCAAAAGCA TTTCTGTTTC TCGTCGTCGG AGCCCGACGA CAGATCTCTG AATCGCTTGA GAAACATAAT GATTGAGTTT GGCCTCTATC TGTGAAGGGT ATATATGCTC TGTATCTACT TTATATTCTG CCAGGAAGAT TGTGAGCATT AAAGTGCCTT GGGCTCTGGC TGAAGATTTG AGCAGATTAA ATGGGTCGCC TAAAGTTGCA TTCTGGAATC AAGGCCATTG AGGAAGAGCC TGAGGACTTT GAGAGTACTG ATTCAAGTAA TACTACCACT TTAGCATGCA TGATTGATAC GGAAATTGCT GCTGTTTTAG CGGTTATGAG AAGAAATGTA AGATGGGGAG GACGGTACAT GTCTGGTGAT GATCAACTAG AACACTCGTT GATTCAGTCA CTTAAAGCTC TTAGAAAACA GGTGTTCTCA TGGAACCAGC CGTGGCATAC GATTAGTCCC ATGTTGTATC TTCAGCCCTT TCTGGATGTG ATACGGTCGG ATGAAACTGG AGCACCGATA ACCAGCATTG CTTTGTCATC AGTTTACAAG ATCTTAAATC TGAATGTAAT TGATCAAAAT ACTGCAAATA TTGAAGACGC TATGCATTTG GTAGTTGATT CTGTGACAAG CTGTCGATTT GAGGTGACAG ATCCTGCATC AGAAGAGGTT GTGCTAATGA AGATACTTCA GGTTCTTCTA GCATGCATGA AAAATAAAGC ATCAGTTATG CTAAGCAATC AGCATGTATG CACTGTTGTC AACACTTGTT TTCGTGTTGT CCACCAAGCA GGAATGAAAG GTGAGTTACT GCAACGTGTA GCTCGCCACA CGATGCATGA ACTAGTGAGG TGTATCTTCT CGCATCTCCC AGATGTTGAC AGAACAGAAA GTACACTTGT CAGCAGAGCT GGAAGCATCA AACAAGAGAA AGCTGGAGTA GACAGTGATT ATGCCATTGT GAGTAAACCA GTCGAGGATG GAAATGCTAA TTCCGAGTAT GATAATGAAA ATTCTGTGGC AACTTTTGCA ACTGGTGCTC AAAGTTTGAT GGATGATGGA CTCGTTGGCC CTGGAAGCAG AAAGCCGGCG TCTCCATATG ATTTGCATAT AATGACAGAG CCATACGGAG TCCCAAGTAT GGTGGAAATA TTTCACTTCT TGTGCTCTTT GTTAAATGTG GTCGAACATG TTGGGATGGG ATCCCGATCA AACACCATAG CATTTGACGA AGATGTGCCT CTGTTTGCAT TGAACTTGAT CAACTCAGCC ATTGAATTGG GTGGATCATC CATCCGCCAT CACCCAAGAT TGTTAAGCTT AATTCAAGAT GAGTTATTTC GTAACTTGAT GCAATTCGGA TTGTCAATGA GTCCCCTTAT TCTTTCGATG GTTTGCAGCA TTGTGCTCAA TTTGTATCAA CATCTACGTA CTGAACTCAA ACTGCAGCTT GAGGCATTCT TTTCATGTGT GATTCTAAGG CTTGCTCAAG GAAAATATGG GCCCTCGTAT CAGCAGCAAG AGGTTGCTAT GGAGGCTCTT GTGAACTTTT GTAGGCAGAA GAGTTTTATG GTGGAAATGT ATGCCAATCT CGATTGTGAT ATAACTTGCA GCAATGTGTT TGAGGAGCTG TCTAACCTTC TATCGAAGAG CACATTTCCT GTGAACTGTC CTTTGTCCGC AATGCACATT CTTGCTCTGG ATGGCCTAAT CGCTGTTATT CAGGGAATGG CCGAGAGGAT AAGTAATGGA TTGACTGGTT TGGACTTGGG TCCTGTCCAT CTTGATGAGT ACACACCTTT CTGGATGGTT AAGTGTGACA ACTATAGTGA TCCAAATCAC TGGGTTTCAT TTGTCCGCAG GAGAAAATAT ATCAAGAGAA GGTTAATGAT TGGAGCAGAT CACTTTAACA GGGATCCAAA GAAGGGGTTA GAGTTTCTCC AAGGCACACA TCTTTTGCCT GACAAACTTG ATCCCCAAAG TGTAGCTTGC TTTTTCAGAT ATACTGCTGG GCTTGATAAG AACCTTGTTG GGGATTTTCT TGGAAATCAT GACGAATTTT GTGTTCAAGT TCTCCATGAG TTTGCTGGGA CTTTCGATTT CCAGTACATG AATCTGGATA CTGCACTCCG ACTCTTCTTG GAAACCTTCA GGTTGCCTGG AGAATCTCAG AAAATACAGA GAGTGCTTGA AGCGTTCTCG GAAAGATACT ATATGCAATC TCCTGAGATT CTGGCCAACA AGGATGCTGC TCTTGTGTTA TCATACTCTA TTATCATGCT TAACACTGAT CAGCACAACG TTCAAGTGAA GAAAAAAATG ACAGAAGAGG ATTTCATTCG CAATAATAGG CATATCAATG GAGGAAATGA TCTACCTCGA GAATTTTTGT CCGAACTCTT TCACTCCATC TGCAACAATG AGATCAGGAC TACTCCAGAA CAAGGTGCAG GCTTTCCTGA AATGACTCCC AGCCGTTGGA TTGATTTGAT GCATAAATCA AAGAAAACTG CTCCATATAT TATGGCTGAT TCAAGGGCTT ATCTTGACCA TGATATGTTT GCTATCATGT CTGGTCCAAC CATTGCTGCC ATATCAGTCG TTTTTGACCA TGCAGAACAT GAAGACGTTT ACCAGACATG CATAGATGGA TTCTTGGCTA TTGCTAAAAT TTCTGCCTGC CATCATCTTG AAGATGTGCT TGATGATCTG GTAGTATCTC TCTGCAAATT CACAACTCTT TTGAATCCAT CATCTGTTGA TGAACCGGTT CTTGCATTTG GTGATGACGC AAAAGCAAGG ATGGCTACCA TCACTATTTT TACCATTGCA AACAAATATG GAGATTATAT ACGTACGGGT TGGAGGAACA TATTGGACTG TATCTTACGG CTACATAAAC TTGGACTTCT GCCAGCTCGT GTAGCCAGTG ATGCAGCTGA TGAATCTGAA CTTTCACCTG AGCAAGGACA AGGAAAGCCC CTCGCGAACT CCCTATCTTC AGCTCATCTA CAGTCAATGG GAACTCCAAG GAGATCTTCC GGATTGATGG GAAGGTTTAG TCAGCTTCTT TCCCTTGATA CAGAAGAGCC AAGATCACAG CCTACTGAGC AACAGCTTGC GGCTCATCAA CGAACACTTC AAACAATTCA GAAATGTCAC ATTGACAGCA TATTTACCGA AAGCAAGTTT CTACAAGCTG AATCTTTGCT GCAGCTTGCG CGTGCGCTCA TTTGGGCTGC AGGTAGGCCA CAAAAAGGAA CCAGTTCTCC AGAGGATGAG GATACTGCAG TTTTCTGTCT GGAATTGCTT ATTGCAATCA CTCTAAACAA CAGAGACAGG ATCGTTCTCC TATGGCAAGG CGTCTATGAA CATATAGCTA CAATTGCTCA GTCAACGGTG ATGCCCTGCA ACTTAGTGGA TAAAGCTATT TTTGGTCTAC TTCGGATCTG CCAGAGACTA CTTCCTTATA AAGAAAGCCT AGCTGATGAG CTTTTGAGAT CTCTTCAGCT TGTGCTGAAA CTGGATGCAC GTGTTGCCGA TGCCTATTGT GAGCAAATTG CAATTGAAGT CAGCCGTCTT GTGAAAGCCA ATGCTAATCA CATCAGGTCT CAGGCGGGTT GGAGAACAAT CACATCCTTA CTCTCCATCA CAGCGCGGCA CCCAGAAGCT TCTGAAGCAG GATTTAATGC CGTATCCTTT GTTATGTCTG AAGGAACTCA CCTGTATCCA GCCAATTATG TACTCTGTGT TGATGCTGCA AGACAGTTTG CTGAATCCCG CGTGGGACAG TCCGAACGGT CTACCCGTGC CCTTGATCTA ATGGGAGATT CATTAGAATA TTTGGCTAAA TGGGCTTTGT CAGCTAAGGA AAACATGGGA GAAGAAGATT TCGGGAAGAT GTCACAAGAT ATTGGGGAAA TGTGGTTAAG GCTTGTTCAA GCACTAAGAA AAGTGTGTTT AGACCAGAGA GAGGATGTCC GAAATCACGC GTTACAGTCA TTACAGAAGT GTTTAGGCGG AGTAGACGGG ATCAACCTAG CTCATAGCAT GTGGTCTCAA TGCTTTGAGA AGGTAATCTT CACGGTTTTA GATGACTTAT TTGAGATAGC TGGTGGGTCA CAGAAAGACT ACCGAAACAT GGAAGGCACA TTGCTTCTCG CAATCAAACT TCTCTCCAAA GTGTTTCTTC AGCAACTCCA AGAGCTGTCT CAGTTATCAA CCTTCTGCAA GCTATGGCTC GGTGTTCTAA CCCGAATGGA GAAATACATG AAAGTGAAAG TAAGAGGCAA AAAAAGCGAC AAGCTTCAAG AATCAGTGCC AGAGCTTCTA AAGAACATAT TGCTGGTAAT GAAGACGAAA GGCGTGCTTT TGCAAAGAAG TGCTCTTGGT GGAGATAGTT TATGGGAACT AACATGGCTT CATGTAAACA ACGTTGCTCC TTCTATGCGA CTCGAGCTAT TCCCTGATCA AGAATGCTCA CAGCTTGGTG ATGATGAAAC AGTATCGAAT GGCTTATCAT CTCCTGAAGC TGGAGCAAAC ACAACGGGTT CGTGACCTTG TAAGTGAGAT CATTAGGTGA GTTTCTTTTG AATATCCATA TAAGTA |
| Length | 4636 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 5602592.. 5608454 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G13980.1 |
| Description | sec7 domain-containing protein |
| TAIR curator summary | Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions. |
| Alias | [EMB30][GN][VAN7][EMBRYO DEFECTIVE 30][GNOM][VASCULAR NETWORK 7] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.89898 |
Ahg493493 | Sec23/Sec24 protein transport family protein |
| 6 |
Ahg929675 | nuclear RNA polymerase D2B |
| 7.48331 |
Ahg944166 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| 7.74597 |
Ahg891409 | oxoprolinase 1 |
| 9.94987 |
Ahg485401 | CDPK-related kinase |
| 12 |
Ahg489516 | Uncharacterized protein |
| 12.3288 |
Ahg487250 | Zn-dependent exopeptidases superfamily protein |
| 12.6491 |
Ahg472532 | Protein kinase family protein with ARM repeat domain |
| 12.6886 |
Ahg924847 | phosphoinositide binding |
| 17.8885 |
Ahg483042 | nuclear RNA polymerase D1B |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|