Detail


ID : Ahg471833

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1
Sequence
GAAACTAAAC AATAATGGAT GATCCATCAG AACCATTGTT GTCTCATTTC GCCAATGATT CTGGAGTCAA CGACAAAACA GCATTGACTT TCGACAAGAT CGTCGAACAG AGTCTATCAG ATTTCGGATT CTGGCAATTT TTCCAGATAT CCCTGGTTGG ACTCGCTTTG CTCTTCGATG CTCAGCAGAT ATTCATCACC GTGTACACAG ATGCTTATCC CACGTGGCAC TGTCTTAACC ACACGATTTG TGATCCTTCA GCTTCCGACA TCTGCAATCT TCCAAGATCA GCTTGGGAAT GGGACGGTGG ATCCAAGGGC AAATCCGTCA TTTCTGAATT CGGCCTCGAG TGCTCGAGGT CTTTACTCAG AGGTATGCCT AGTTCCGCTT TCTACATCGG TGCCATTGTT GGAGGGTTTT TTCTAGCTTT GATCCCAGAC GATTCCTTGG GTCGCAAGAA ACTAGTTGTG TTCTCAACCT TTGCAATGTC AATCACTTCA ATCTGTGTTA TCTTCTCAAC CAATATATGG ATTTATACAT TCCTAAAGTT TTTCATCAGA TTTTCGCGAT CACAGACCTG GTCATACGCG TTGGTTCTCA TCAGTGAGCG AGTCTCCACC AGATGGAGAC CTAGAGCTAC AATGATTCCA TTTACCCTAT TTGTTTTAGG GTTTATGTCG TTGTCTGGAA TCGCTTACCT TGCTCAAGAT TCTTCATGGA GATATCTCTA TCTATACACA TCTGTTCCAG CGATATTTTA CTGTATCTTC CTCTACCTCT TTGCACTCGA ATCACCTCGG TGGCTTCACA TGCAAGGAAA TGATAAAGAA GCCATTGATG TTCTCACAAA GATGTCGCCG AAGAACAAAG CTTATTTGGA ATCAGTGGTT TCTAAGTTAC CCCACGAGCA AGAAAACTTT GAACAAGTGC CAACTTACTC TATTAAGGAC TTCTTCTTCC GAAAATGGGC TTTTCAGAGG ATTTTAGTTG TTATGATCAT AATGTTTGGG TTGGGAATAT CGTATTACGG TGTTCCTTTA GCAGCTAGAG ACATAGACGT CAACATCTAC TTGAGTGAAA CCCTAAATGC ATTGGTGGAG CTGCCTACTT TCGTCATCAC TCCAATCTTA TTGGAGAGAT TCAACAGAAG AAGCTCTGTT CTAGTGAATA CCTTACTTGG TGGGGCATCG GGAGTGCTCT GTTTTGTTCT CAGCATCCTC GGAACATTCT TCTGCGCAAG GATCGGATTC AACCTTATGG CAGTTTTTAT GGTTGAAATG TTTCCAACTT GTGTGAGAAG TTCGGCAACA ATGATGTTTA GACAGGCTCT TGTTGTTGGA GGAGCTTGTT GTCCGTTAAT TTCTTCGATT GGAAGATACA TTCCGTCAGT ATCGTTTGCG ATTTTTGGAA TTGCAATGTC AGGTTTAGGA TTGTTCGTTT TGATTCTGCC TGAGACAAAA GGTTTGAGTC TCTGCGACTC AATGGAAGAA CAAGAAAAGA GAGATCAAGC CGTAAACACT AGCCATGTTT GCTGAGAGTT TAAGAGTTTG TTTAGCTTAA ACATTCTCCA TTTTCATATG TTTTCAATTC TGTGATGTTT GTCTTGATTT TATAAGAGTA AAATATTTGA AGTTTTGTTA AGTAAAAACT AAAGAGT
Length1657
Protein Sequence
Protein Residue
Map Locationscaffold_1: 6544505.. 6546194
Download Sequence
A.thaliana
AGI-codeAT1G16370.1
Descriptionorganic cation/carnitine transporter 6
TAIR curator summary
Alias[ATOCT6][OCT6][ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6][organic cation/carnitine transporter 6]
Gene coexpression
MR
MR Locus Description
10.583 Ahg922407
14.7309 Ahg949754 Integrase-type DNA-binding superfamily protein
16.9706 Virus0862
25.1595 Ahg471409 Integrase-type DNA-binding superfamily protein
27.2764 Ahg497398 cytochrome P450, family 94, subfamily C, polypeptide 1
30.282 Ahg475633 phloem protein 2 A5
30.2985 Virus1738
32.5883 Ahg482493
32.9393 Ahg915575 cytochrome P450, family 707, subfamily A, polypeptide 3
38.3406 Ahg933612
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression