Detail



ID : Ahg472432

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|472432|fgenesh2_kg.1__2386__AT1G21970.1
Sequence
AAAAAAAAAA GACGGCAGAG AAACAATGGA ACGTGGAGCT CCCTTCTATC ACCATCAGCT ACCCAAATCC ATCTCTGAAT TGAATTTGGA CCAGCACAGT AACCCAAACC CAATGACCAG CTCAGTCGTC GTAGCCGACG CCAGTGACAA CAACAAGGGT ATCGTAGCCC AGCAGCAACT ACCATGTATG GCTCGTGAAC AAGACCAGTA CATGCCAATC GCAAACGTCA TAAGAATCAT GCGTAAAATC TTACCGTCGC ACGCCAAAAT CTCTGACGAC GCCAAAGAAA CGATTCAAGA ATGTGTCTCC GAGTACATTA GCTTCGTGAC CGGTGAAGCC AATGAGCGTT GCCAACGTGA GCAACGTAAG ACCATAACTG CTGAAGATAT CCTTTGGGCT ATGAGCAAGC TTGGGTTCGA TAACTACGTG GATCCACTCA CCGTGTTCAT TAACCGGTAC CGTGAGATAG AGACCGATCG TGGGTCGGCA CTTAGAGGTG AGCCACCGTC GTTGAGACAG GCCTACGGAG GAAATGGTAT TGGGTTTCAC GGCCCACCAC ATGGCCTACC TCCTCCTGGT CCTTATGGTT ATGGTATGTT GGACCAATCC ATGGTTATGG GAGGTGGTCG GTACTACCAA AACGGGTCGT CGGGTCAGGA TGAATCCAGT GTTGGTGGTG GCTCTTCGTC TTCCATTAAC GGAATGCCGG GTTTTGACTC ATATGGTCAG TATAAGTGAA GATGGAATTA TTCTTCATTT TTATGCATTA TCTATTCAAA ACATGTGTCT GGATAGATAT TTTTATTTTT ATGTCTTATC AATAACATTT CTATATAATG TTGCTTCTTT AAGGAAAGTG TTGAATTTCA ATACTTTTTG AGAACTGATT TATATATGCA AATGA 
Length905
Protein Sequence
Protein Residue
Map Locationscaffold_1: 9148914.. 9156108
Download Sequence
A.thaliana
AGI-codeAT1G21970.1
DescriptionHistone superfamily protein
TAIR curator summaryTranscriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis.
Alias[AtLEC1][EMB 212][EMB212][LEC1][NF-YB9][EMBRYO DEFECTIVE 212][LEAFY COTYLEDON 1][NUCLEAR FACTOR Y, SUBUNIT B9]
Gene coexpression
MR
MR Locus Description
2.23607 Ahg929694
2.44949 Ahg904581
4.47214 Virus2238
6.32456 Virus1470
6.32456 Ahg907766
6.32456 Ahg340534
6.32456 Ahg951905
6.32456 Ahg948313
8.48528 Ahg914141 Plant invertase/pectin methylesterase inhibitor superfamily protein
8.83176 Ahg913195
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression