Detail



ID : Ahg474342

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|474342|fgenesh2_kg.1__4296__AT1G52250.1
Sequence
GACTAAATTT AAAGAACAGT TGTGTTCGTT CGTGCCATTC TTTTGAATAG TTATACTAAT ATTTATCATC TTCTTGAAAA GACTTTGCAT CCAAGAACCC GTGAGGAAGT AATTGAAATC TAAACTCAGT GAAGAGAAGA CGACAAAGAA AAAGGAGTCT ATAAAGATCC AAAGCTTTCC TTGTCCTTAT TTCTCAGCAG AAAACTGAAA AACGTTTTGA GTTTTTGAGA GAGAGATAGA GAAAGATGTT GGAAGGCAAA GCAATGGTGG AAGATTCAGA CATGCCAGTG AAGATGCAGA TGCAAGCTAT GTCTTTTGCT TCTCAAGCTC TTGATCTTTT TGATGTCTTT GATTGTAAAT CCATTGCTGG TCACATCAAG AAGGAGTTTG ATGAGAGATA TGGGAGTGGA TGGCAATGTG TGGTGGGATC AAATTTTGGG TGTTTCTTCA CACATTCTAA AGGGACTTTT ATCTATTTCC AATTGGAGAC ACTTAAGTTT CTCATCTTTA AAGGCGCTTC TACTCCTTAA TTACACAACC CCTAATCATG GGGATTTTTT TTTCTTTTAT TACTTTTGCT TCTTTGAAAA TCTGAGAAAT AAATTGTAAG ACTATCAAGA TCTTTAGCTT TGTTTGAATA AGAGAGGAAG TTGATTTCAA TGATGTGAGA T 
Length671
Protein Sequence
Protein Residue
Map Locationscaffold_1: 26469824.. 26470713
Download Sequence
A.thaliana
AGI-codeAT1G52240.1
DescriptionRHO guanyl-nucleotide exchange factor 11
TAIR curator summaryEncodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
Alias[ATROPGEF11][PIRF1][ROPGEF11][phytochrome interacting RopGEF 1][ROP (rho of plants) guanine nucleotide exchange factor 11]
Gene coexpression
MR
MR Locus Description
3.60555 Ahg333988
9.38083 Ahg477299 AGAMOUS-like 67
22.5167 Ahg477412 Protein of unknown function (DUF1666)
23.2164 Ahg925191
23.8747 Ahg916271
25.3377 Ahg911831
26.7208 Ahg931144
29.4618 Ahg477685 F-box associated ubiquitination effector family protein
33.2265 Ahg914090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
33.8821 Ahg354918
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression