Detail



ID : Ahg477707

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|477707|fgenesh2_kg.3__408__AT3G04510.1
Sequence
GTGTCTTTAA TGGAAAATTT ATGATTTCTG ATGATCAGTC TCACGATCTC ATCTCTTTCT CTTTCTCTAT AAATGACCTA TTATGATGTT TTTGCAGCTA TATATACGGA CATTTGTGTC TATTTTTCTA TCCATCTTCT CATTCAATAG TAGAAAAGAG GAAAAACACA AAAGACAACA GTAGAAAAGG AGAAAGAAAT TCTACTTGTA TCTCTCATCT TGAAATTAAA AAAAAGCAAG AGGTCTCTTC TTATTTTGCA GGTTGTTCCT CTTTGCCTCA CCATTTTTGA ACAACATCAT CTGATCATCA TCACTGAATC TATCCTTTTT TGAAGCACCT ACCTCACCAC TTTGCAGTAC AAGGAAGTAT CCAAGTCTTC ATTCTATCTC TCTCTTTTGT TACTTTATTA TACCCTTTAA CCAAAAAAAG TTATTTAATT ATTATAAATA ACTAAAAACC TAATCTTTGC CCTAAATCAC TCAAACTCGA TCTGGTGAAA GAACCCTAAT TTAGAAACAT CTAAAAAGCT ATGGATTTGA TCTCTCAAAA CCACCACAGC AGAAACCCTA ATACCAGTCT CTCGACGCAA ACTCCTTCTT CCTTTTCTTC TCCACCATCC TCTAGCCGCT ACGAGAACCA GAAACGCCGT GACTGGAACA CTTTCTGCCA ATACCTCAGA AACCACCATC CGCCGCTCTC TCTAGCGTCT TGCAGCGGTG CACACGTCCT CGATTTTCTG CGTTACCTTG ACCAGTTCGG CAAAACCAAA GTCCACCACC AAAACTGCGC CTTCTTTGGC CTCCCAAATC CACCGGCCCC TTGTCCTTGT CCTCTCCGAC AAGCCTGGGG CTCACTCGAC GCCCTCATTG GTCGTCTCCG TGCAGCCTAC GAGGAGAACG GTGGAGCTCC CGAGTCTAGC CCTTTTGGCT CACGGTCCGT CAGGATTTTC CTCAGGGAGG TTAGAGATTT CCAGGCTAAA TCACGTGGCG TTTGCTATGA GAAGAAGAGG AAAAGGGTCA ACAACAAGCA AATAACTCAG TCGCAACCGC CTTTACCACA GCAGCCGCAG CAGGAGCAAG GTCAGTCTAT GATGGCTAAT TACCACCATG GTGCAACTCA TTAATATCGT ATTACTTCCA TATATATATG CTCGCATCTA GCTATTTATA CGTTCCAACC TTTGTATTTG TGTCATGCAA TCCCTATTTC CTCCATTATC CACTGTTAAT TTATATCATT GTTTCTTAAT TACACCTATT GTTTTGTCTT TTCTTATAAT CAATAAGTTA AATGAACTTG GATT 
Length1304
Protein Sequence
Protein Residue
Map Locationscaffold_3: 1453458.. 1454789
Download Sequence
A.thaliana
AGI-codeAT3G04510.1
DescriptionProtein of unknown function (DUF640)
TAIR curator summary
Alias[LSH2][LIGHT SENSITIVE HYPOCOTYLS 2]
Gene coexpression
MR
MR Locus Description
6.9282 Ahg927917 pre-tRNA
8.88819 Ahg948919 Protein of unknown function (DUF784)
20.2485 Ahg887570 low-molecular-weight cysteine-rich 55
22.2935 Ahg918982 Protein of unknown function (DUF3049)
24.4949 Ahg923053
31.5119 Ahg943168
36.9865 Ahg947575 RING/U-box superfamily protein
38.4187 Ahg904550
38.5746 Ahg947107
43.1509 Ahg913835 Thioredoxin superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression