Detail



ID : Ahg478982

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|478982|fgenesh2_kg.3__1683__AT3G15400.1
Sequence
CACCCAGATC ATGAGGTACA TCCTGAGCAC ATGGTCAAGC CTGACCATAA ACTGCAGTCC ATGTTGGGTG CATTAGAACA TCCTGAGCAC ACGGTCAAGC CTAACCATAA ACTCCAGTCT ATGTTGGGTG AATCAGAACA TCCTGAGCAC AAGGTCAAGC CTGACCATAA ACTCCAGTCC ATGTTGGGAG AACATCTTGA GCACAAGGAA AAGCCTGACC ATAAACTCCA GTCCATGTCG GGTGTATCAG AACATCCTGA GCACAAGGTC AAGCCTGACC ATAAACTCCA GTCTTTGTTA GGTGAATCAG AACATCCTGA GCACAAGGTC AAGCCTGACC ATAAACTGCA GTCCATGTCT GGTGAATCAA AACATCCTGC GCACAAAATC AAGCCTGATC AGATAATGCA GACCATGGCG AGTGAACTGG AAGAGGAAGA TCCAGACCAC ACAACTAAGC CTATGGGATA TGGTGTAGGT AGGGGCTACG GAAGTGGTGG GTCTGGTGTT GGCTATGGCG TTGGAATTGG CTCTAGTGGA GGGAGTGGCT TTGGGGAAGG AATTGGCTCT AGTGGAGGCA TTGGCTTTGG AGAAGGTATT GGCTCTAGTG GAGGCAGTGG CTTTGGAGAA GGTATTGGCT CTAGTGGAGG CAGTGGCTTT GGAGAAGGAA TTGGGTCTAG TGGTGGCAGC GGCTTTGGTG AAGGAATTGG GTCTGGTGGT GGTACAGGTA TTGGCATTGG AGAAGGAATA GGATCCGGGT CTGGCCAACC CAATTGCGGT CCAGTCACGG GAGCTCCAGG CGAAGGGATT GGTATCGGAA TAGGACAGGG CTCTAGTGGT GGACCCGGTG TAGTTGTCCC AGGCGCAACA ATCCCTCCCA TAGTAGTTCC AGGCGCACAG ATTCCCGGTT TTACGATTCC AGGTATCACA GTTCCTGGCT ACGGTTCTGG GTGCCAAACA GGTGGTTGCA ATCCGTACCC ACCACACTAC TATAACCCAC CAAGCTGTCC ACATTGTCCA CCTTTCACAT CAGGAGAAGA CAAGCACATG TCAGACAAAG GAGCAATGAC GGAAGCTCTT GCACCCACTA CACCGGAGAT GCATGTTTAA GTGTCCATGA AACACGAGTC TAATAAATCT CACTCATAAT GAAATCTATT TTGGTTTGGT AAAAGCTTCA CATAAAGTTG AATAAGACAA CTTTCTTGCC CAAGTAGAAA GTTAAATAAG GGAAAGTTAT TTAAGAATAA GTGATTGAGG ATTAGGCAGC TGGTAATTGC ATTTCCATGG CTGTATCTGT ATGACTGACA AATGAGTTTT AAAAACCGGT CCACAAATCA AGT 
Length1343
Protein Sequence
Protein Residue
Map Locationscaffold_230: 694.. 2071
Download Sequence
A.thaliana
AGI-codeAT3G15400.1
Descriptionanther 20
TAIR curator summaryEncodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.
Alias[ATA20][anther 20]
Gene coexpression
MR
MR Locus Description
13.7477 Ahg942510 transposable element gene
28.0713 Ahg921700 ENTH/VHS/GAT family protein
29.4449 Ahg350644 Lateral organ boundaries (LOB) domain family protein
37.3095 Ahg906792
37.5766 Ahg478320 GDSL-like Lipase/Acylhydrolase superfamily protein
39.5474 Ahg312077 Vps51/Vps67 family (components of vesicular transport) protein
42.5793 Ahg943128
47.3286 Ahg917658 subtilase 4.13
48.6621 Ahg359114 transposable element gene
50.8724 Ahg491172 Chalcone and stilbene synthase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression