| Annotation |
|---|
| Description | jgi|Araly1|480014|fgenesh2_kg.3__2715__AT3G25070.1 |
| Sequence |
AAGGGTCAAA GAATTCATAG CATCACTTAG TCAACGCTTT GATATAACTT CTTCTTCTTC TTCGTCTCCT CTCCTTCTCA CATCTCTCTG TCTTTCTCTT TCTCTCTCAA ACCTATCAAA GCTTTAGACT TCAATTCTTT AGCTACCTCT CTCCCATGGC ACGTTCGAAT GTACCCAAAT TTGGAAACTG GGAAGCTGAG GAGAATGTTC CTTACACAGC TTACTTTGAC AAAGCTCGTA AGACTCGAGC ACCCGGTGGC AAGATCATTA ACCCGAATGA CCCGGAGTAT AACTCTGATT CTCAATCACA AGCTCCTCCT CCTCCTTCCA GAACCAAAGC TGAGCAAGTT GAGCCGGTTA GAAGATCGCG TGAGCATACG AGAAGCCGAG AAGAGAGCGA GTTGAAGCAG TTTGGTGATG CTGGTGGTTC ATCAAATGAA GCTGCTAACA AAAGACAAGG AAGAGCTTCT CAGAACAATA GTTATGACAA GTCACCTTTG CATAAGAATT CATATGATGG TACTGGAAAA TCTAGGCCTA AACCTGCTAA CCTTAGAGCT GATGAAAGCC CTGAAAAAGT CACAGTGGTG CCGAAGTTCG GTGACTGGGA CGAGAACAAC CCGTCATCAG CTGATGGATA CACACATATC TTCAATAAAG TCCGCGAAGA GAGAAGTTCT GGAGCAAATG TGAGTGGATC TTCAAGAACA CCGACTCATC CAAACTCCAG TAAACCTAAC AACACTTCCA CATGTTGCTG CTTTGGCTTT GGAGGAAAAT GAAAGGGAAA TGTTTCCGGA AGATTGTATA TACTTATTGA GAAATCAGTG TGTAATCTTA ATGATCAGAC CGACGATCGA GCTTCTTTAG ATGAAATAAG GCATCAGTAC CACTTGCATA AGATTTTATA GTATAGTTTT GTATGTATCT TTTGTAATTT TTCCTTGATA CTTTTGGTGT TTTTTCATAA GACACAATCT AGTTTTGGAC CTGCTTGCAG ATGCATTATA TCTTGGTACT GCCTGACCAA TTTGGTTAAC CGATTTGATA CAAATCAGAG ATATTTGGGT ACC |
| Length | 1073 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 11601148.. 11602864 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G25070.1 |
| Description | RPM1 interacting protein 4 |
| TAIR curator summary | Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Major virulence target of the TTSE HopF2Pto. |
| Alias | [RIN4][RPM1 interacting protein 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 14.8324 |
Ahg946058 | plant U-box 8 |
| 16.8226 |
Ahg492542 | cysteine-rich RLK (RECEPTOR-like protein kinase) 18 |
| 19.6723 |
Ahg482091 | ARM repeat superfamily protein |
| 24.98 |
Ahg487251 | ADR1-like 2 |
| 34.3366 |
Ahg491227 | extra-large GTP-binding protein 2 |
| 38.833 |
Ahg494731 | phosphatidic acid phosphohydrolase 2 |
| 42.72 |
Ahg937994 | Eukaryotic aspartyl protease family protein |
| 44.8107 |
Ahg475195 | secretory carrier 3 |
| 51.0294 |
Ahg924051 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 52.2494 |
Ahg484456 | auxin signaling F-box 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|