Detail



ID : Ahg480347

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|480347|fgenesh2_kg.3__3048__AT2G14530.1
Sequence
CCAAAATCTC CGCCATGGCT AAGAGCTTCT GAGAGAGCCA TGGCTACGAT TTCACCCAAC AAACTCTCAA TCTTCCCTCT ACTCTCCCTT CTCTGTTTCA TCTCCATTTT CTTCCTCCTC TCTCTATCCA AACGCGCTTC TCTCTCCTCT CCCAACACTC ACCGCTCCGC CACCGTCTTC CCTCCAAAAT CCGACGGTTC CCTCTCACCT CTCTCCGCCA CTTGCGACTT CTCCGACGGC TCATGGATCT ACGACCCCAA CCCCAGATCC ACCAGGTACA CTAGTAATTG TAAAGAGATC TTCAAAGGAT GGAATTGCAT TCGTAACAAC AAAACCAATG GTCTCGAGAT CTCTAAATGG CGATGGAAGC CTAAGGACTG TGATCTTCCT TCGTTTGATC CACTCAAATT TCTTCAGACT CATCGAAATA CCAACATCGG ATTTGTGGGT GATTCATTGA ATAGGAACAT GTTTGTATCT TTATTCTGTA TGTTAAAGAG TGTGACGGGT GAACTGAAGA AGTGGCGACC AGCGGGTGCA GATCGCGGAT TTACGTTTTT GCAGTATAAT CTGACTATAG CGTATCATCG AACAAATCTC TTGGCTCGTT ATGGTAGGTG GTCAGCTAAT GCCAATGGTG GTGAGTTAGA ATCTCTTGGA TTTAAAGAGG GCTATAGAGT TGATGTCGAT ATTCCAGACA GCTCATGGGA AAAGGCTTCG AGTTTCCATG ACATTCTCAT TTTAAACACT GGGCATTGGT GGTGGGCGCC ATCAAAATTT GACCCTCTAA AATCTCCTAT GCTATTCTTT GAAGGTGGCC GGCCAATACT TCCACCAATA CCTCCTGCTG CTGGCCTGGA TCGGGTTCTA AACAATATGG TAAATTTTGT GGAGAAAACA AAGCGACCTG GAGGGATCAT ATTCTTCCGA ACACAATCAC CTAGGCACTT TGAAGGAGGT GACTGGAACC AAGGTGGTAC TTGTCAAAGA CTGCAACCTT TGTTACCTGG ACAAGTTGAA GAATTGTTCT CAGTGGGGAA CAACGGAACA AATGTAGAGG TTCGTCTGGT GAATCAACAC CTCTATAACT CCCTCAAGAG TAGAAGCGCC TTCCACGTTT TGGACATAAC TCGAATGAGC GAGTACAGAG CTGACGCTCA TCCAGCAGCA GCTGGTGGAA AGAATCACGA TGACTGCATG CATTGGTGCC TTCCGGGCAT CACCGACACT TGGAATGATT TATTCATCGC AACTCTCCAT ACGATCAAAG GATAAGTAAC CTGAAGGAAG AATCACACCC GTCTTTATAA TTGTTTTGAT TCGTTGGGTC TAGCGTCAGT CATTTTTTTC TTTTTGTACT CTTGTAAATT TTGATGTTAT CTTCTGCGTA TTTTTTAATT TAGTTATTTT TTGGTCTACA GTATGCAAAA GTGTTTTAAA TATTATATAC ACTTTTCATT TTATCTTTTT GGTCAAACAC TTTTTTCTTC TAAAAAGTTG AATCATCTC 
Length1509
Protein Sequence
Protein Residue
Map Locationscaffold_3: 17988384.. 17991397
Download Sequence
A.thaliana
AGI-codeAT2G14530.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 13
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL13][TRICHOME BIREFRINGENCE-LIKE 13]
Gene coexpression
MR
MR Locus Description
4.24264 Ahg473564 inositol polyphosphate 5-phosphatase I
7.2111 Ahg481476 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
10.583 Ahg919579 Endomembrane protein 70 protein family
11.7473 Ahg356484 beta-amylase 2
17.2047 Ahg494092 Cysteinyl-tRNA synthetase, class Ia family protein
20.0749 Ahg482359 Alba DNA/RNA-binding protein
20.9045 Ahg927644 Protein kinase superfamily protein
21.0713 Ahg894393 Tetratricopeptide repeat (TPR)-like superfamily protein
27.2764 Ahg492695 P-loop containing nucleoside triphosphate hydrolases superfamily protein
33.9853 Ahg470691 NAD(P)-linked oxidoreductase superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression