| Annotation |
|---|
| Description | jgi|Araly1|480529|fgenesh2_kg.3__3230__AT2G19430.1 |
| Sequence |
AGTTTCACCG GAAGTTGCAA AGAAGCAGAG GAATATGTAC GGAGGCGCCA CTAACTGGAA CGAAGATGAG TATAGAGAAT CAATATTGAA GGAGCGAGAG ATACAAACAC GTACCGTATT CAGAACCGCC TGGGCTCCTC CGGAGAGAAT CTCTAATCCA GACGCATTTG TTGTCGCTTC CAGCGATGGA ACTTTAGCTT TCCATTCTCT GAACTCGCTT GTGTCTCAAT CGGCGAGTTT TGGCTACTCG AAAGGTCAGG ATGTTATGGT GGCTGAGCCT GAGAGAGTGG TTAGGGCTCA TGATGGCCCT GCTTATGATG TTAAGTTCTA TGGTGAAGAC GAAGATGCTT TGCTACTTAG TTGTGGTGAT GATGGTAGAG TTTGGGGATG GAAATGGAGA GAATTTGCTG AATCAGAGAT GTCTCTTCAT TTGCAAGAGA ATCATGTGAA GCCATTGCTT GAATTGACTA ATCCACAACA CAAAGGTCCT TGGGGTGCTC TTTCACCGAT GCCTGAGATC AATGCCATGT CTGTTGATCC TCAGTCAGGA AGTGTATTTA CGGCAGCTGG TGATTCTTGC GCATATTGTT GGGACGTGGA GAGTGGTAAT ATCAAAATGA CCTTCAAGGG GCATTCAGAC TATTTGCATA CTGTAGTTTC TCGTAGTTCT GCAAGTCAGA TATTGACGGG TTCAGAGGAT GGGACTGCGA GAATCTGGGA TTGCAAAACG GGGAAATGTG TTAAAGTAAT TGGTTCCCAG GATAAAAAGT CCCGCCTTCG CGTTAGTTCT ATGGCCCTTG ATGGAAGTGA AAGCTGGTTG GTTTGTGGCC AGGGCAAAAA TTTAGCTTTA TGGAATCTTC CTGCCTCAGA ATGCGTATCA ACAATATCCA TCCCTGCGCA TGTACAGGAT GTGATGTTTG ATGAAAAGCA AATTTTGACT GTAGGAGCAG AACCAGTTCT AAGACGTTTC GACTTAAATG GAGCTTTGCT TTCTCAAATT CACTGTGCTC CTTGTTCAGT ATTTTCCATT TCCTTGCATC CAGCAGGAGT AGTTGCTGTG GGAGGTTATG GCGGTCTTGT TGATGTCATC TCTCAATTCG GAAGTCATCT CTGCACATTT CGTAGCAGCT CATTGTGAAA CTCCTTACTC GGTATGGCTC GATACCCTAA AGAGGTACCA AAATGTGTCA GTCAGATTAT TGAACCTTTG CTTTGTTTTC CTTAGGTTCT TGCTCCTGAC TAAAGACCAA ATAGTTGTTT GGTTCAGTGT AATTGGTTTG TGGTTCCGTA GTTGCTATCG AATTTGA |
| Length | 1307 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 19923702.. 19926672 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G19430.1 |
| Description | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 |
| TAIR curator summary | This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. |
| Alias | [AtTHO6][DWA1][THO6][DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.06226 |
Ahg919175 | protein arginine methyltransferase 10 |
| 11.5326 |
Ahg480649 | high mobility group B4 |
| 16.2481 |
Ahg489475 | TCP-1/cpn60 chaperonin family protein |
| 21.3542 |
Ahg916607 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| 21.9089 |
Ahg483374 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein |
| 22.9783 |
Ahg904413 | phosphoesterase |
| 30.0167 |
Ahg492089 | PDI-like 5-4 |
| 31.225 |
Ahg311385 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 31.6386 |
Ahg322431 | tubby like protein 3 |
| 34.3802 |
Ahg477645 | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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