| Annotation |
|---|
| Description | jgi|Araly1|483706|fgenesh2_kg.4__2766__AT2G45690.1 |
| Sequence |
AGCGACCGGC AAAATTGCAA CCAGTGAATG GAATTTTCTT GTTTCCCAAT TTCTTCTGTG AAATAGAAAA TCTTTATCTG AAGCTCAATG GAAGCTTATA AGCAATGGGT TTGGAGAAAT AGAGAGTATG TACATTCCTT AGGATCCTTT GCCAACGGAT TGACATGGCT GCTTCCTGAG AAGTTTTCTG CTTCAGAGAT TGGACCAGAA GCAGTAACGG CTTTTTTGGG CATATTCACA ACTATCAATG AACACATCAT TGAAAATGCT CCAACACCTC GTGGCCTTGT TGAATCTTCT GGGAATGATC CATCCCTTTC TTATCCGCTA CTCATCGCCA TCCTAAAGGA TTTGGAAACT GTTGTGGAAG TGGCAGCTGA ACACTTCTAT GGAGACAAAA AATGGAACTA CATTATTCTC ACTGAAGCTA TGAAGGCTGT CATTAGGTTA GCCTTGTTTC GGAATAGTGG GTATAAGATG CTTCTTCAAG GAGGGGAAAC ACCTAACGAG GAGAAAGATT CTGACCAATC CGAGTCGCAA ATTAGAGCTG GTAATTTAGG TAGAAATCTC GGGCCTCATA GTCTTGGAAA TCAAAATCAT CATAATCCAT GGAACTTGGA AGGACGGGCG ATGTCAGCTT TAAGTTCATT TGGTCAGAAT GCAAGAACAA CAACAACATC TTCTACCTCC GGTTGGTCTC GAAGAATTCA ACATCAGCAA GCGGTTATAG AGCCTCCAAT GATCAAGGAG AGGCGAAGAA CGCTCTCCGA TCTACTATCT GAAAAGGGTG TTAATGGAGC GTTGTTTGCA ATGGGTGAGG TTCTTTACAT AACGAGACCG CTCATTTACG TTCTTTTCAT CAGAAAATAT GGAGTCAGAT CTTGGATTCC TTGGGCTATA TCGCTTTCTG TGGACACATT GGGAATGGGT ATTCTTGCAA ATTCGAAATG GTGGGGAGAG AAGAGCAAGC AAGTCCATTT CTCAGGACTT GAAAGGGATG AGCTGAGGAG ACGAAAGCTG CTATGGGCAT TGTACCTCAT GAGAGATCCA TTCTTCACCA AGTACACAAG GCAGAAGCTG GAAAGCTCTC AAAAGAAGCT GGAACCAATT CCATTGATCG GATTCCTCAC AGAGAAGATT GTGGAGCTTT TGGAGGGAGC TCAGTCACGG TACACTTACA TATCGGGATC GTGAGGCTAA GCGTTTACTT ATGGTTTTTA CGCAACTGAA GAATATCCCC ATTGTTGGAA TGCTTTTCTA GATCTTTGAA GGCTCCTGTT TCAGGCTTTT GTAAGAAATT GTGTTTATTG CAGTTAGAGA ACATAACAAT GGACAGATGC ATCTGATGAG ATAAGCTTCT CTGTGTCTAA AGAAACGACC AATACGAACA AAACAAGCAT CATTAATGCA GGATGATTAA ATGGTTTGTC AGAAATACTA CA |
| Length | 1442 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 21098914.. 21101461 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G45690.1 |
| Description | shrunken seed protein (SSE1) |
| TAIR curator summary | Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica. |
| Alias | [ATPEX16][PEX16][SSE][SSE1][ARABIDOPSIS PEROXIN 16][PEROXIN 16][SHRUNKEN SEED 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.16515 |
Ahg474886 | methyltransferases;copper ion binding |
| 11.4891 |
Ahg480877 | |
| 12.1655 |
Ahg489645 | Protein prenylyltransferase superfamily protein |
| 17.2627 |
Ahg934616 | phosphorylethanolamine cytidylyltransferase 1 |
| 18.7083 |
Ahg948632 | RNA helicase family protein |
| 31.4325 |
Ahg470202 | Pentatricopeptide repeat (PPR) superfamily protein |
| 35.1568 |
Ahg327694 | transducin family protein / WD-40 repeat family protein |
| 37.0945 |
Ahg923526 | |
| 38.7943 |
Ahg939245 | SET domain protein 14 |
| 45.0555 |
Ahg473508 | ATP-dependent Clp protease |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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