Detail



ID : Ahg483729

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|483729|fgenesh2_kg.4__2789__AT2G45890.1
Sequence
AGCCAACAAC GCAAGAGAAG AATTTGAAAC TCACCAAAAA ATCGTGATGG AGAGTTCATT GAATTCCGAA CAAAACGAGG TATCTGTCTC AGGAACTCCG ACGAGCTCTG TTTCTTCGCC ATATCGGAGA ACATACTCTG ATATCTCCGG ATTATCCCAC CGGTTCGACG TTCAGAATTT TTATAACCGG CCGTCGAACA CTAACGCTGT TGTCTTGAGT GGCCATGAAG AAGATGTCTC CGAAGACGCC GTGGAACCAA AAGATGATGT CGTCAATGAC GGAGATGGAG ACGAGGAAGA CAGCGACATT GATTCTGCAG AAGATGCAGA GCTAGAGATG ATGAGAGAAA GATTTGCGAA GCTATTGCTT GGTGAAGACA TGTCAGGAAG TGGGAAAGGA GTTTGTACCG CTGTTACTGT CTCAAACTCC ATAACCAATC TCTATGCGAC TGTGTTTGGA CAAAGTTTAA GGTTACAACC ATTGAGTACA GAGAAGAAAG AGTTATGGAA GCGAGAGATG AATTGTTTCA TGTCTATTTG TGATTACATT GTCGAAGTTA TTCCAAGATC TCTTGGTACT AACGTTGAGA TAACAGAAAC AAAGCTAAGA TCTGATATTC TCATGAGTCT TCCTGCTTTG AGAAAACTCG ATAATATGCT AATGGAGATA TTGGATAGTT TTACGGAGAA CGAGTTCTGG TACGTTGAAA GAGGAAGCTC ATCGATGAAC TCGAGCGGTG GTGGCAGAGA TTCAGGAACG TTTAGGAAAG TGGTGGTTCA ACGGAAAGAC GAGAAGTGGT GGCTTCCGGT GCCATGTGTT CCTGCTGAAG GTTTATCGGA AGAAGAACGA AAGAATTTGC GTCACAAACG TGATTGTGCC AGTCAGATAC ATAAAGCAGC ATTGGCCATT AACGATTCCA CTCTTAATGA CATGGATATT CCTGATTCTT ATCTCACCAC TCTTCCAAAG AGTGGGAAAG CAAGTGTAGG AGACGTGATA TACAAGCAAC TGTGCACTGC CGAGAAGTTT TATCCTGACC AGCTTCTCGA CGTCTTGAAG ATAACATCTG AGCATGAGGC GCTTGAGCTC GCCGACAAAG TTGAGGCTTC ACTAGTTACG TGGAGGCGTA AGACTGGAGG ATTGACTCAC TCCAAGTCCT CATGGGACAT GATGAAAGAT ATCGGTGGCG ATGCAGATCG TGGCAATGAC AAGAACCACA TTCTTGCGGC TCGAGCAAGG AGCTTACTTT TCTGTCTGAA ACAGAGATAC CCCGAACTTT CTCAGACCTC ACTTGACATC TGCAAGATTC ACTATTCGAG GGTTTTAGAA GGTTTGGCTT ATAATGTTGT GTCGTGGATT GATGATGTTC TTTACGTCGA CAGAACAGTG AGGAACAGAG AGGATTAGGG TTTTCATACT GAGTTTTTTC TTTTGAGCAT CGACAAAAAA TGTTTACCTT TTTTGGATGT AATGTTTTCT GAATCTCTAA AAGGAATT 
Length1498
Protein Sequence
Protein Residue
Map Locationscaffold_4: 21176334.. 21178486
Download Sequence
A.thaliana
AGI-codeAT2G45890.1
DescriptionRHO guanyl-nucleotide exchange factor 4
TAIR curator summaryEncodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Alias[ATROPGEF4][GEF4][RHS11][ROPGEF4][RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4][guanine exchange factor 4][ROOT HAIR SPECIFIC 11][ROP (rho of plants) guanine nucleotide exchange factor 4]
Gene coexpression
MR
MR Locus Description
25.5343 Ahg930178 transposable element gene
31.6228 Virus3877
34.9428 Ahg918948
37.229 Ahg919650
50.3587 Ahg475244 AGAMOUS-like-56
50.3984 Ahg331170
61.1637 Ahg922069
71.5542 Ahg930506
75.1997 Ahg497454 Protein of unknown function (DUF784)
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression