Detail



ID : Ahg484447

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|484447|fgenesh2_kg.5__439__AT3G26740.1
Sequence
AAATATCTAA AATCACTAAA CCAAAAGATC AACTGATTAC AAAAATGCAG GGCTCTCTGT TCATCAAACC AACAATTCTT CTTCCTCTTC CTTCTTCAGT TTCTTCTCCA AAGCTCACTT TTCTTCTTCC TCAAGCAACC AAAGCTTCAA GACTCTCATC TCTCAGATCA AACAACTCAT CATCTCCTTC AACTTCTGAT CCTAACACCG TCGACTACAA CTCCTCCATC CTTTCTGTTT TCCCAGCTGA AGCATGCGAA GTTATCAGTG GATACGCTTG TTCTGCTGAC ATATACCCTG AAGTCAAGCT CGATACAAAG CCCGTCTCAC GTCCCGTGGC TTCAGAGCCC GTTGACAGAG AATACGAAGA GTATAACAAC CCTAAAACGG TTTTCCGCGA AGAGGCCTGC GATGATCTTG GAGGAGAATT CTGTGAACCG GGCTATCAAA AAGATGCCAA CTAGAAGAAA CAAGATTTTA TGTCATGTGA ATATGTGTTT GTATCTCTAG AAGTCTTTGT AACCACTCCT TAATTAATGA TATCTAGCTT CACTACTTAA TCAAGATTGA TGTTATGGAT CAGACCCGAG TTCCCAAAGT T 
Length601
Protein Sequence
Protein Residue
Map Locationscaffold_5: 2882628.. 2883408
Download Sequence
A.thaliana
AGI-codeAT3G26740.1
DescriptionCCR-like
TAIR curator summarytranscripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Alias[CCL][CCR-like]
Gene coexpression
MR
MR Locus Description
2 Ahg481034 cold, circadian rhythm, and rna binding 2
2.44949 Ahg471553
3.74166 Ahg490700 cold, circadian rhythm, and RNA binding 1
4 Ahg486603 Remorin family protein
6 Ahg895509 Chaperonin-like RbcX protein
6.32456 Ahg481974 BTB/POZ domain-containing protein
6.48074 Ahg313123 UDP-glucosyl transferase 85A3
7.07107 Ahg312977 catalase 1
7.28011 Ahg910393 CCT motif family protein
7.48331 Ahg481105 homeobox protein 6
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression