| Annotation |
|---|
| Description | jgi|Araly1|485232|fgenesh2_kg.5__1224__AT3G48780.1 |
| Sequence |
TTCTTCGACG AAAGGGGAAG AGGTTGAATT CAAAATCTCT CTCTCTTCTT CTCTGTCTCT TCTCGCGTGA GAGAAGCGTA GAATTTTCCA GATCTCATCA TTGAATTCAA AACTCAAAGC TAGAGAAGAA GAAGAAGACG AGACGGAGCT GAAACAATGA TTACGATCCC ATACCTTACC GCTGTATCAA CGTATTTCAG CTACGGTTTG CTCTTCGCCT TTGGTCAGCT TCGCGATTAC TCCCGCCTAA TCTTCGATTG GTGGCGCACC AACAATCTCC AGGGATACGC GCCGATCTGC TTGGCGCATG AGGATTTCTA CATCAGACGA TTGTATCATC GGATTCAGGA CTGTTTTGGA CGTCCCATAT CAAGTGCACC TGATGCCTGG ATTGATGTGG TTGAGAGAGT TTCTGACGAT AACAACAAGA CGCTAAAGCG AACTACAAAG ACTAGTAGGT GCCTTAATCT GGGGTCCTAC AATTATCTTG GATTTGGTTC TTTTGATGAA TATTGTACGC CTCGTGTTAT TGAGTCTTTG AAGAAATTTT CAGCTAGTAC ATGTAGCTCT CGCGTTGATG CAGGAACTAC ATCTGTGCAT GCAGAACTTG AGGAATGTGT TGCTAAATAT GTCGGACAAC CTGCTGCTGT TGTCTTTGGC ATGGGCTATG CAACAAACTC GGCTATTATT CCCGTCTTGA TTGGAAAGGG AGGGTTGATA ATAAGCGATT CTTTGAACCA TACTTCAATT GTCAACGGCG CTCGTGGTTC AGGAGCTACT ATCCGTGTTT TCCAACACAA CACACCTGCT CATCTGGAAA AAGTATTGAA AGAACAAATC GCTGAGGGAC AACCCAGGAC GCATAGACCG TGGAAGAAAA TTATTGTTGT TGTTGAGGGT ATTTACAGCA TGGAAGGGGA AATTTGTCAT CTGCCCGAGA TTGTCTCAAT ATGCAAGAAG TATAAGGCAT ATGTTTACTT GGACGAAGCT CACAGCATTG GAGCAATTGG CAAGACAGGA AGGGGTGTTT GTGAACTCCT GGGGGTTGAC ACTGCTGATG TGGACATAAT GATGGGAACT TTCACGAAAT CTTTTGGGTC TTGTGGTGGC TATATTGCCG GATCAAAGGA CCTCATCCAA TATTTGAAGC ACCAATGCCC GGCTCACCTT TACGCAACGT CAATTTCAAC TCCTTCCGCG ACACAAATCA TATCGGCGAT AAAGGTTATC CTTGGAGAGG ACGGTTCAAA CAGAGGGGCA CAAAAGTTAG CAAGAATAAG GGAGAACAGC AACTTTTTCA GGGCTGAGTT GCAGAAGATG GGGTTTGAGG TTCTTGGAGA CAATGATTCC CCAGTCATGC CAATAATGCT TTACAATCCA GCAAAAATTC CAGCCTTCTC AAGGGAATGT TTGCGAGAAA ACTTGGCAGT TGTGGTCGTC GGTTTCCCAG CTACACCGCT ATTGCTAGCC AGGGCTCGTA TTTGCATATC CGCATCTCAC TCAAGAGAAG ATCTTATTAA AGCCCTACAG GTTATAAGCA AAGCAGGTGA CCTTACCGGG ATCAAATATT TTCCGGCTGC TCCAAAGAAG CAAGAAGTAG AGAAAAATGG CATCAAATTG GATTAAAACC GCAATGCATC AGTTTCTTTC CAAGAGATGT TTGGTTAGCA ATTAGCATTA GTATACAATT TCCTCGCTGT TCGTCTTTGT CTTGTCGTGA AACATGTGAT TGTTGTCATT CTTCTTTCTT TATTTTTTTT TTAATTGGTT TTGTCAGAGT TAATATTGTT GCCCCAAAAA ATTTACAGAT GTTATCGAAG ACATTTTCGA ATTGTTTTGT TTTGGTCTTC CAGACCACGA ATATGCCAGC AGAAG |
| Length | 1875 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 13315538.. 13319596 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G48780.1 |
| Description | serine palmitoyltransferase 1 |
| TAIR curator summary | Encodes one of the two LCB2 subunits (LCB2a and LCB2b) of serine palmitoyltransferase, an enzyme involved in sphingolipid biosynthesis. LCB2a and LCB2b are functional redundant. Double mutants are gametophytic lethal. |
| Alias | [ATSPT1][SPT1][SERINE PALMITOYLTRANSFERASE 1][serine palmitoyltransferase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 8.94427 |
Ahg495958 | HEAT/U-box domain-containing protein |
| 10.4881 |
Ahg493343 | F-box/RNI-like superfamily protein |
| 16.7033 |
Ahg470463 | Ankyrin repeat family protein |
| 27.1109 |
Ahg949896 | cyclic nucleotide gated channel 1 |
| 28.775 |
Ahg495173 | Clp ATPase |
| 29.9165 |
Ahg951276 | fatty acid amide hydrolase |
| 31.4643 |
Ahg496813 | 2-oxoglutarate dehydrogenase, E1 component |
| 36.8511 |
Ahg471931 | ubiquitin-conjugating enzyme 34 |
| 37.9473 |
Ahg496189 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain |
| 38.3406 |
Ahg947489 | Lung seven transmembrane receptor family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|