Detail



ID : Ahg485843

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|485843|fgenesh2_kg.5__1835__AT3G54430.1
Sequence
CTCTCTCTCT GTTTCTCACT ACTCTCACTA GACTCCTCCA TAGCTAAGCT CCACCTACTA GATTAGCCTC CACGCGCTTT TATATTACTT CTGCCACAGT GGCAAATCCA CCTTCTTCCC TCTCATGGCC ACCACCACCA CAACCATCAC CATCTTCAAC ACCTTTCGCC GGCGTCTCAA TCCCACCTGA TTCCGCCGTT GGAATCAGTA CTCCAGACTA CATGTTAGGT CTTCGAAACA TCATTCTCTT ACCTCCACCA CCGCAGATAA CAACACGGCT GTCTCCTTCT CCGGTAAACA TAGCGGCGGT GGAAGACAAC AACACAGTTG GAGAGAAAGT ATGCAGAGAC TGTGGAAACA GAGCAAAGAA AGAGTGTTTG TTCGAAAGGT GTAGAACATG TTGTAAAAGC AGAGGATACA ACTGTGTCAC TCACGTGAAG AGCACGTGGA TTCCTTCTTC TGCAACTCGT TCTTCATCTT CTCCTTCTGA GAGGAAGAAG AAGCTCAAAC TCGATAAACA GAGTTCCGCT AATGTCTCGC CGCTTCCGAC AACCACTTCT CGTCAAGAGA GAAGCTTCAA AGAGGGGTTA CCGGGGAAAA TTGAAGCTCC GGCAGTTTTT AAACGGACAA GAGTAACAGC GATAAGCAAC AACGAGCAAG CAGAGATTGG TTATCAAGCA ACTGTAACCA TAAGTGGTCA TGTCTTCAAG GGCTTTCTTC ATTACTATGG TGTTGATCAT AACAAAGCTT TTCCATGTCT TTCTCAAAAA TGATGAAAAC TACTTCATAG GATTCTGTAT ATAGTTTCTC TGTTTTTGTC TTTTTTATAT TCGACATTAA GGGACA 
Length846
Protein Sequence
Protein Residue
Map Locationscaffold_5: 16071377.. 16072341
Download Sequence
A.thaliana
AGI-codeAT3G54430.1
DescriptionSHI-related sequence 6
TAIR curator summaryA member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Alias[SRS6][SHI-related sequence 6]
Gene coexpression
MR
MR Locus Description
22.2261 Ahg887985
27.6043 Ahg483035 Mitochondrial substrate carrier family protein
31.6228 Ahg926710
33.8969 Ahg894082
39.7618 Ahg899207 SNF7 family protein
47.392 Ahg904328 nuclear factor Y, subunit A6
48.4974 Ahg319874 SET domain-containing protein
49.051 Ahg329483 Pentatricopeptide repeat (PPR) superfamily protein
50.7937 Ahg904901
62.2254 Ahg480909 Tetraspanin family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression