Detail



ID : Ahg486743

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|486743|fgenesh2_kg.5__2735__AT3G62390.1
Sequence
TTAACAGTTA CAGAGAAAAA AAGATGGAGA GACAAAGGAG CATCTCTGTG AAGTCCACGA GAGTCTTAGC ATTCATCATC ACAACAATCT CTTCCGCCAT TGTTTTCTTC ACTTTCTTCT CCTCTTCCTT AATCAAATCT AACTCTTCTC TTTACCCAAC ACCAGACTCT AACTTCCAGA TCGATTTAAG TCCTTTGGCC GCCGTCTCCG ATTCTTCAGT TTCTCCTCAA GCAAGCCCGG TTCCGATCTC TACCCATTTC AATTCGCCCG AAAACACTTC CGGGTCTTCA AAAATTTCAG TTTTTGAGCA GAAGATTCGC GGCGAGAGTT TGGTTAAGGA AGTTAGGGAA ATTGCTAATT TAACTTCGAT TAAAGTGGTT GAAGTTTCGA GCAACAATGG TGAGGAGAAG ACAAAGAAGA GAATCGAAGA GTGTGATGTT ACGAAAGGGA AGTGGGTTTA CGATAGCGAC TATCCATTGT ACACAAATGC GTCTTGTCCT TTTATCGATG AAGGATTTAG TTGTCAAAGC AATGGACGAT TGAATCTTAA TTACATGAAT TGGAGATGGG AGCCTCAAGA TTGTGATGCT CCCAGGTTCA ATGCTACAAA AATGCTGGAA ATGATTAGAG GGAAGAGGCT AGTGTTCGTT GGAGATTCAA TTAATAGGAA CCAGTGGGAA TCTATGCTTT GTTTGTTGTT TCAAGCTGTT AAAGATCCCA AGAGAGTCTA CGAAATCCAC AACCGAAGAA TCACAAAAGA GAAAGGGAAT TACAGCTTCC GTTTCGTGGA TTATAAATGC ACTGTGGAAT TCTATGTTAC TCATTTCTTG GTTCGTGAGG GTAGAGCAAG AATAGGAAAG AAGAGAAGAG AAACACTTAG AATCGATGCT ATGGATCGAA CCTCTTCGAG ATGGAAAGGT GCTAATATCT TAGTGTTCAA TACAGCTCAT TGGTGGTCTC ATTACAAAAC CAAATCGGGG GTCAACTATT ACCAAGAAGG AGACCAGATT CATCCCAAGC TCGATGTATC AACCGCTTTC AAGAAAGCTT TGCAGACTTG GTCATCATGG GTTGACAAAA ATGTCGACCC GAAGAAAACT CGCGTTTTCT TTAGAAGCGC TGCACCTTCT CATTTCAGTG GAGGAGAATG GAACTCAGGA GGTCACTGCA GAGAAGCCAA CATGCCGTTG AACCAAACCT TCAAACCGAG TTACTCGAGC AAAAAGTCCA TTGTTGAGGA AGTACTGAAG CAGATGAGAA CACCGGTAAC CCTCTTGAAC GTTAGCGGTT TATCTCAGTA CAGAATTGAC GCCCACCCGT CTATTTACGG AACAAAACCC GAAAACCGGC GTTCAAAAGC TGTCCAAGAT TGCAGTCATT GGTGTCTCCC TGGTGTTCCT GATACATGGA ACCACTTCCT TTACCTCCAT TTGCTCCATA AACGATAAAT AGAGTTTACA AACTAATCAT AGCTCCAGTT ACTTGTTCAG AATTGTTTGT TTAATGTAGG GATGGTCGAT CCAGTTTAAC CAACCAAACC AAAACCATAT TGGAAAAACC ACTATGACAA CTGAAATGAA AAGACAAAAA AAAAAGAACA AAGTTTTAGT TTTCCTCTGA CTCACGCTGG TCCCATGAAT GTCAATCTCT TGGTTAATTG 
Length1660
Protein Sequence
Protein Residue
Map Locationscaffold_213: 5003.. 7126
Download Sequence
A.thaliana
AGI-codeAT3G62390.1
DescriptionTRICHOME BIREFRINGENCE-LIKE 6
TAIR curator summaryEncodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Alias[TBL6][TRICHOME BIREFRINGENCE-LIKE 6]
Gene coexpression
MR
MR Locus Description
4.89898 Virus3944
9.16515 Ahg315791
9.79796 Virus3856
9.79796 Ahg481702 SAUR-like auxin-responsive protein family
32.4037 Ahg482989 Protein of unknown function, DUF547
40.9268 Ahg907276 RNA polymerases N / 8 kDa subunit
52.5642 Virus0944
63.2456 Ahg946901 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
63.2456 Virus0918
63.2456 Ahg932471
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression