| Annotation |
|---|
| Description | jgi|Araly1|487085|fgenesh2_kg.6__219__AT5G03150.1 |
| Sequence |
AAAAAAACTT ATATGCTCTT GTTCTTGTTC TTCTTCTCCC CTCTACAAAT TAAACCCTAA TTAACTATCT CTTTTGTTTG TATACTGTTC TAAACCTCCT GATCATCTTC TTGTTTTCTT GCAAGATTTC ATAAAAAAAC AAAACCCAGC TGTTTTTGTT CTTGTTCTTT AGCTCCGATC CGTTTCAACT TAAATCACAG ATATGCAGAT GATTCCAGGA GATCCATTTT CTATTTCATC CTCCATGGGA GGGTTTGTTC ATCAAGAAAC ACACCTTCAT CATCCTCAGC AGCAGATCCC TGACCTCAAC CCTAATTCTA ACCCTAACCC AAATGTGAAA CCAAACTCTT CATCAGCCAA GAAGAAGAGA AATCAACCTG GCACTCCAGA TCCAGATGCT GATGTCATCG CTCTATCGCC AACAACACTC ATGGCGACAA ACAGATTCGT GTGCGAGATC TGCAACAAAG GGTTTCAAAG GGATCAGAAC TTACAACTCC ATCGCCGTGG CCACAATCTT CCATGGAAGC TGAAGCAACG ATCCAAACAA GAGGTGATAA AAAAGAAAGT ATACATATGC CCTATCAAGA CTTGTGTACA CCATGATGCT TCTAGGGCCC TTGGAGACCT CACTGGGATC AAGAAACACT ATAGCCGCAA ACACGGTGAA AAGAAGTGGA AGTGCGAAAA GTGTTCTAAG AAATACGCTG TTCAGTCTGA TTGGAAGGCA CATGCGAAAA CTTGTGGTAC TCGCGAGTAT AAATGTGACT GTGGCACGTT GTTCTCCAGG AAAGATAGTT TCATCACACA TAGAGCGTTC TGCGACGCAT TGACTGAAGA AGGTGCGAGG ATGAGTTCAC TAAGTAGTAA CATTCCTGTG ATCTCTACGA CGAATCTGAA TTTTGGAAAC GATTCAAATG TTATGAATAA TCCAAATCTT CCTCATGGAT TTGTTCACCG AGGAGTTCAT CATCCCGACA TTAATGCTGC TATCTCTCAA TTCGGTTTAG GGTTTGGACA TGACCTAAGT GCAATGCATG CGCAAGGTCT ATCCGAGATG GTTCAAATGG CCTCCACCGG CAACCACCAC CCCTTCCCGT CGTCATCATC ATCCCTCCCT GATTTCTCCG GCCACCACCA ATTCCAAATT CCAACGACTT CCACAAACCC TAATCTCACC TTATCATCAT CCTCAACATC ACAACAAACA TCTGCTTCTC TACAACACCA AACCCTAAAA GACTCATCTT TCTCACCACT CTTCTCCTCT TCCTCCGAAA ACAAACAAAA CAAGCCTCTG TCTCCAATGT CTGCAACAGC TCTCTTACAA AAAGCTGCAC AAATGGGCTC TACTCGAAGC AATTCCACCA CCGCTCCGTC CTTCTTCGCA GGCCCAACAA TGACATCATC CTCAGCCACC GCTTCTCCTC CTCCTCCTCC TAGATCGTCT TCACCAATGA TGATCCAACA ACAACTAAAC AACTTCAACA CCAATGTCTC AAGAGAGAAT CCCAATCTTG CTCCCCCTCC TCTTAGTGGT GTCACCACTA GTAGTGTGGA TAATAATCCC TTTCAATCGA ACCGGTCGGG TCTAAACCTG GTTCAACAAA TGGGTCTAAC CCGGGATTTT CTTGGAGTGA GCAACGAGCA TCACCCTCAC CAAACGGGTC GTCGTCCCTT TTTGCCTCAA GAACTCGCAA GGTTTGCTCC ATTGGGTTGA TTATGTGTTT AATTAAATAC TGTGTATGGG CCGGGGGACA AGATTTTGGG TTTAATTAGG ATTGGAAGTT CCTTTGAGGA GACAGGTCTA ATTAAGAACC GTACCCCCTT GTGAAGCGGT CTGAATGTGG GGACAAAGGT TGACAAGACA TCATCATATC AATTTACATT GAATGTTATG TACTTTTACT ATGTTTTTGA TTATCGCCAG TCACATAATA TATACCATGA CATGCATGGA TATGTATTTC CGACGTTGTC GTTTTGTAAA TGTTAATTTT TTTTTC |
| Length | 2006 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 844210.. 847504 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G03150.1 |
| Description | C2H2-like zinc finger protein |
| TAIR curator summary | JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect. |
| Alias | [JKD][JACKDAW] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 30.0333 |
Ahg486561 | AT-hook motif nuclear-localized protein 18 |
| 67.3201 |
Ahg492665 | root hair specific 14 |
| 96.1561 |
Ahg890578 | HSP20-like chaperone |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|