Detail



ID : Ahg487980

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|487980|fgenesh2_kg.6__1114__AT5G11440.1
Sequence
ATGAAGCCAG GAGCATTTGC ATTGAATCCA CATGCAGCAT CGTATGTACC AATCTCCAAA AGAATGGATT GTGGTGGTGG TGGTGATGAT GGTTTGATGT TTGCAGCAAA GTCCCCCACG CAGGGCCAGC AGATAAGTTT CTCAGGCGTT CAAGTGTCAA TGCCGAAGAA ATCCTCTGAA ATGGCTTACA AGCAGATCAG GGATGATGAT TTGGATTTGG AGATGGATAT TGACATGGAT ATTGAATACC TTCTTGTGAC TTTCTCTGGT CTCTCACAAG AGTCTATTAC TGATGTTTAC CTCGCGAATG GCGGTGATCT TGAAGCAACC ATTGAGATGC TGAATCAGCT TGAGATATAC AGTACTGAAT CGGAGGAAAA TCTGCCAGAG ACACTTGATA TTGGGGATAT CTCTGAGTCA GGGCCTTCAA CCTCAAAAGC TACTGAAGTC GCTGCATCCA CATCATCGGT TATCCCTAAT GCACCTGTAT CGGCCTGATT CATGAATCCT TAGTTGTGAA GTTTTTGCTT CTTCTTTTTT TTTTTTTTTT TTTGTATTGG TTTGCATACC CTTAATAAGT ACAGCAATGG GGGTTAGGGT ATGGTATCAA TGAAGTTGAT GGTATCTAAG AGAAATGATG ATATGTGAGT AGTTGGAAAA TGTATAGTTT TGGAAGTTCA AATCTGAGTG GTGTGTTGTT GTTGGGCAGA TTAGATTAGT GTCTGGTCTT TTGACCCCTT TTTGTTTGCA GCTCCATCTG TGGATTGGAT TTTCCTAAGA ATAATACTGA TAAATGATAA TGATATGTTT ATTATGGT 
Length818
Protein Sequence
Protein Residue
Map Locationscaffold_6: 4411221.. 4412136
Download Sequence
A.thaliana
AGI-codeAT5G11440.1
DescriptionCTC-interacting domain 5
TAIR curator summaryInteracts with PAB (poly A binding protein) in yeast two hybrid experiments. Contains PAM2 motif, a PABC interacting domain.
Alias[CID5][IPD1][CTC-interacting domain 5][INCREASED POLYPLOIDY LEVEL IN DARKNESS 1]
Gene coexpression
MR
MR Locus Description
4 Ahg937718
12.2474 Ahg926432
12.7279 Ahg946652
13.784 Ahg923459 Cysteine/Histidine-rich C1 domain family protein
15.1658 Ahg917207
18.9737 Ahg948991 C2H2 and C2HC zinc fingers superfamily protein
21.3542 Ahg942261
29.5127 Ahg908543 TRAF-like family protein
29.7993 Ahg952309 Tetratricopeptide repeat (TPR)-like superfamily protein
29.8161 Ahg950350
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression