| Annotation |
|---|
| Description | jgi|Araly1|488222|fgenesh2_kg.6__1356__AT5G13960.1 |
| Sequence |
TCTTCGTCGT CATCACAGTT TCAATCTCTC GCTGCTTGGT CTTCCCTCTC TTCTTCTCCG CTAGCTATTC CTGGGGAAAA AGAGTGATTG ATGGCTGGAA AAAGGAAACG AGCTAATGCT CCTGACCAAA CAGAGCGAAG ATTGAGTGTT CGGGTTCAGG AAGTGAGACA AAAGGCGCTA GATGAGAAGG AGCGTTTAGT ACGGGAGAGG GTTAAACTCC TCAGTGACAA AAAGAGTGAA CTTTTTGTCG ATGACACTGA TTTACATGAG AAGGAAGAGG AGAATGTCGA TGGGAGCCCT AAACGAAGAA GCCCTCCAAA GCTATCAGCA ATGCAGAAAG GAAAGCAGAA ATTGAGTGTT TCTCCGAATG GCAAGGACGT GAACTTGGAC GCTCATCTCA AAGTCACAAA GTGTCTGAGG GTTTTTAACA AGCAATATCT CCTCTGTGTC CAGGCTAAGT TGAGCAGACC TGATTTGAAG GGTATAACTG AGATGATTAA AGCCAAGGCG ATATTGTACC CAAGAAAATT AATTGGTGAC CTTCCAGGTA TTGACGTTGG ACACCGATTT TTTTCAAGAG CTGAAATGTG TGCTGTAGGC TTCCATAACC ATTGGCTAAA TGGGATCGAT TATATGGGAA TGGAATACGA AAAAGAGTAT AGTAACTACA AGTTTCCGCT TGCTGTTTCT ATCGTTATGT CGGGCCAGTA CGAGGATGAT CTAGACAATG CAGATACGGT GACTTACACT GGACAGGGAG GGCACAACTT AACTGGTAAT AAACGCCAGA TTAAGGATCA ACTCTTACAA CGAGGGAATT TGGCCCTAAA GAACTGCTGC GAATATAACG TACCTGTCAG AGTAACTCGT GGTCATGATT GCATAAGTAG CTATACCAAA AGAGTATACA CTTATGATGG ACTGTACAAG GTTGAAAAGT TCTGGGCACA AAAGGGCGTT TCAGGATTTA CAGTGTATAA GTACCGACTG AAACGATTGG AGGGGCAACC AGAACTAACT ACTGATCAGG TCAACTTTGT TGCTGGACGC ATACCAAAGT CTACTTCAGA AATTGAGGGT TTGGTATGCG AAGACATCTC CGGAGGGCTA GAATTTAAGG GTATTCCAGC CACAAATCGT GTTGATGATT CACCAGTTTC ACCATCATCA GGTTTCACAT ACATCAAATC TTTGATTATT GGGCCTAATG TCAAAATCCC AAAGAGTTCA ACTGGGTGTA ACTGCCAAGG CAGCTGCACT GACTCAAAGA AATGTGCATG TGCTAAGCTT AATGGGGGAA ACTTTCCATA TGTTGACCTT AATGATGGCA GATTAATTGA GCCTCGAGAT GTTGTATTTG AATGTGGTCC ACACTGTGGG TGTGGGCCAA AATGTGTTAA CCGAACTTCT CAGAAGCGTC TAAGATTTAA TCTTGAGGTT TTCCGCTCTG CAAAGAAGGG TTGGGCAGTT AGATCATGGG ACTACATACC AGCTGGTTCA CCAGTATGTG AGTACATAGG AGTCCTCAGA AGAACTGCTG ATGTGGATAC TATCTCTGAC AATGAATACA TATTCGAGAT TGACTGCCAA CAGACAATGC AAGGTCTTGG TGGAAGACAG AGAAGACTAA GGGATGTTGC TGTACCAATG AATAATGGAG TCAGTCAGAG CAGTGAAGAT GAGAATGTAC CAGAGTTCTG TATTGATGCT GGTTCAACAG GAAACTTTGC TAGGTTTATA AATCACAGTT GTGAACCAAA CCTGTTCGTT CAGTGTGTCC TGAGTTCTCA CCAGGATCTA AGGCTTGCCC GCGTGGTTCT TTTTGCAGCT GACAACATTT CACCACTGCA GGAGCTAACT TACGACTATG GATATGCGCT TGATAGCGTT CATGGGCCGG ATGGGAAGGT GAAGCAGCTC ACTTGCTACT GTGGAGCGCT AAATTGTAGG AAACGCCTAT ACTAACAAGG CTATTGGTAA GCTTATTTTT TGGTCACTCT ATTTTGGGGA GTACATAGAT AGCAACTATC TCCCAAGTGG AAGAACCCTT AACATCTTAT TTGAGGGACT TTAGCATCTT CTGCAGCGTA CAATTAGTGC TGCCTTTTTC GGCATTGTTG TTTCCTGAAC CCTATTGTTG CCATTGGCAT CTTATCTATC GGGTCAACAG TATTAAT |
| Length | 2177 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5436674.. 5441533 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G13960.1 |
| Description | SU(VAR)3-9 homolog 4 |
| TAIR curator summary | Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. |
| Alias | [KYP][SDG33][SUVH4][KRYPTONITE][SET DOMAIN PROTEIN 33][SU(VAR)3-9 homolog 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.24264 |
Ahg477806 | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein |
| 14.8324 |
Ahg496142 | nuclear RNA polymerase C1 |
| 15.5563 |
Ahg479946 | MUTL protein homolog 1 |
| 17.2627 |
Ahg482933 | pseudouridine synthase family protein |
| 20 |
Ahg484310 | |
| 23.2164 |
Ahg926567 | Methylthiotransferase |
| 26.0384 |
Ahg480240 | Minichromosome maintenance (MCM2/3/5) family protein |
| 26.5518 |
Ahg484837 | Outer membrane OMP85 family protein |
| 27.4955 |
Ahg490580 | expansin A20 |
| 27.7489 |
Ahg944131 | MRG family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|